Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04154 ATGCAGGGAGGTAAAATTTCTGTGGTGGTGGGTACTATAACCGAAGATATCCGTGTTTATGAAGTTCCAACCATTAAGGTTACAGCACTCAGGTTTACGGAGACCGCAAGAGCAAGAATAGAGAAGGCCGGTGGTGAATGCTTGACATTCGATCAGTTGGCTCTTAGGGCCCCATTGGGACAAAACACGGTTCTTCTTAGAGGTCCAAATAATGCTCGTGAAGCTGTGAAGCATTTTGGTCGTAGCCACACCAAGCCTTATGTGAGAGCAAAGGGTAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCCGTGGATTCAGAGTTTGA 330 0.4667 MQGGKISVVVGTITEDIRVYEVPTIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPNNAREAVKHFGRSHTKPYVRAKGRKFEKARGKRNSRGFRV 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04154 109 SUPERFAMILY Ribosomal proteins L15p and L18e 2 67 IPR036227 -
Trre1g04154 109 PANTHER 60S RIBOSOMAL PROTEIN L18 3 109 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre1g04154 109 Gene3D - 1 109 - -
Trre1g04154 109 Pfam Ribosomal protein 60S L18 and 50S L18e 4 109 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04154 Trre-Chr1 46698018 46698675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04154 5 109 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 81.081 4.08e-62 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04154 K02883 - pop:7478929 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04154 1 46698018 46698675 Trre1g04154 1 46698018 46698675 ECH