Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04150 ATGGAGCAAGGGTTGAGAAAAGGACCATGGTCAAAACAAGAGGATGAAATATTAAAAGAATATGTAAAAATATATGGACCGAAAAATTGGAATGCATTAAAAAGGTTAACTGGACTTCCTCGAGATGGTAAAAGTTGTCGTCTAAGATGGCTTAATCATCTTAATCCAAATTTGAGGAAGGCAAAATTTAGTGAAGAAGAAAAACAGAAAATCCTTCAACTTCGTCAACTTGAAGGCAAATGGTGTAAAATTGTTAAACAGTTTCCTGGAAGAACAGACAATGAGATAAAGAACTTCTACAATATTAATGAGAGAAAGAAACGTAAAATGGAGAATAGCAATGGAGAATGTCGGAAAAAGAAAATAAATTATTTGTCACTCAATGATGAAAGCATGAAACCACATGATAATAAGTTGAATGACATTAGAGAAAGTAGTCTCAGTGGTTTCATGAACAACCAACAACAAGACATTTCTGACACACATGAAAGGAAATTCATGAAAGACTCGTACCATACTCCAGTTATGCAACCTTCAAATATGGTATGCAATAATGTGGCAAGTACTTCTATATGCAATAATTCTGCCCCAACATGCATCAATAGGGAAAAAGCTCCTTTTGTGCCAATTGGCAAGGTATCAGATTTGCCGCCTCCATTGCTACGAAGTATAGATTTTCAATCTTTTGAACCTCCACTTCCTTCATACACTTCTATAAGCAATAATTCTTCCCCAACATTTATTGATAGGGGTGAAACTTCTTTTGCTTCTATGGACATGAAATCAGGTCCACCTCCTCTTCCACTTCAAAAAAGTATAGATTTTCAATCTCTTGAATCTCCACTGATTCATAAGTATCCTCCACTTCCACTTCGATCATCCGAGGAGATTCAGCAAGAACAATTAGAACCAGATTCTCCATTCAATAATGGCTTTTTGGTGGTTGATGAAAATGGGATGAAGCCAATTTCTTTGAAGAAAGATGAATCAAAAAGTGAAGACTTAATAGATTTGTTGGATAGTTTAGGTTGGCTTGATGGTTATATTTTTTGA 1053 0.3514 MEQGLRKGPWSKQEDEILKEYVKIYGPKNWNALKRLTGLPRDGKSCRLRWLNHLNPNLRKAKFSEEEKQKILQLRQLEGKWCKIVKQFPGRTDNEIKNFYNINERKKRKMENSNGECRKKKINYLSLNDESMKPHDNKLNDIRESSLSGFMNNQQQDISDTHERKFMKDSYHTPVMQPSNMVCNNVASTSICNNSAPTCINREKAPFVPIGKVSDLPPPLLRSIDFQSFEPPLPSYTSISNNSSPTFIDRGETSFASMDMKSGPPPLPLQKSIDFQSLESPLIHKYPPLPLRSSEEIQQEQLEPDSPFNNGFLVVDENGMKPISLKKDESKSEDLIDLLDSLGWLDGYIF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04150 350 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 313 - -
Trre1g04150 350 SMART sant 6 56 IPR001005 -
Trre1g04150 350 SMART sant 59 106 IPR001005 -
Trre1g04150 350 Gene3D - 7 59 - -
Trre1g04150 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 58 IPR017930 -
Trre1g04150 350 CDD SANT 62 101 IPR001005 -
Trre1g04150 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 108 IPR017930 -
Trre1g04150 350 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Trre1g04150 350 Pfam Myb-like DNA-binding domain 10 70 - -
Trre1g04150 350 ProSiteProfiles Myb-like domain profile. 55 101 IPR001005 -
Trre1g04150 350 CDD SANT 9 54 IPR001005 -
Trre1g04150 350 Gene3D - 61 131 - -
Trre1g04150 350 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04150 Trre-Chr1 46659564 46667025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04150 2 186 MYB Transcription Factor Family AT5G10280 39.583 4.35e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g04150 Myb_DNA-bind_6 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04150 - K09422 tpra:123888557 410.609