Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g04149 | ATGATGATGAAGTACTTGACTCTATTATACACTCATCTAAAATGGATATTGGATATCCTTATATATTATCCCTTCTATAAACTCAATGATTCCCATTTTCCAATAATTGAAGAAGTATACAATGTATGCAATTATGAACCCAGTTTTGACTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAAATGAGATTAGAGTGTTGAGATGTAACCATATCTATCATAGAGAATGTTTGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGATTCATTGGTACCTAAAAGGGATGTAACTGAGCTTGGAGCCGAAGTTCTTTCATTTAATTTTTGTGCTATTCGTAGTGATAGAGCTCGTGATGATTGGTTTCTAATTTGA | 408 | 0.3382 | MMMKYLTLLYTHLKWILDILIYYPFYKLNDSHFPIIEEVYNVCNYEPSFDSEEDVECSVCLCKIEEGNEIRVLRCNHIYHRECLDKWIAFKNNTCPLCRDSLVPKRDVTELGAEVLSFNFCAIRSDRARDDWFLI | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g04149 | 135 | SUPERFAMILY | RING/U-box | 47 | 109 | - | - | |
| Trre1g04149 | 135 | SMART | ring_2 | 57 | 98 | IPR001841 | - | |
| Trre1g04149 | 135 | SMART | ringv_2 | 56 | 99 | IPR011016 | GO:0008270 | |
| Trre1g04149 | 135 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - | |
| Trre1g04149 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - | |
| Trre1g04149 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 106 | IPR013083 | - | |
| Trre1g04149 | 135 | PANTHER | - | 3 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g04149 | Trre-Chr1 | 46654652 | 46655059 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g04149 | 52 | 115 | C3H Transcription Factor Family | AT2G04240 | 46.875 | 1.67e-14 | 64.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g04149 | K16282 | - | jre:108981879 | 128.642 |