Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04147 ATGATGATGAAGTACTTGACTCTATTATACACTCATCTAAAATGGATATTGGATATCCTTATATATTATCCCTTCTATAAACTCAATGATTCCCATTTTCCAATAATTGAAGAAGTATACAATGTATGCAATTATGAACCCAGTTTTGACTCAGAGGAAGATGTAGAATGTTCAGTGTGTCTATGCAAAATAGAAGAAGGAGATGAGATTAGAGTGTTGAGATGTAACCATATCTATCATAGAGAATGTTTGGATAAATGGATTGCTTTCAAGAACAACACTTGCCCTCTTTGCAGAGATTCATTGGTACCTAAAAGGGATGTAACTGAGCTTGGAGCCGAAGTTCTTTCATTTAATTTTTGTGCTATTCGTAGTGATCGAGCTCGTGATGATTGGTTTCTAATTTGA 408 0.3431 MMMKYLTLLYTHLKWILDILIYYPFYKLNDSHFPIIEEVYNVCNYEPSFDSEEDVECSVCLCKIEEGDEIRVLRCNHIYHRECLDKWIAFKNNTCPLCRDSLVPKRDVTELGAEVLSFNFCAIRSDRARDDWFLI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04147 135 SMART ringv_2 56 99 IPR011016 GO:0008270
Trre1g04147 135 CDD RING-H2_PA-TM-RING 56 99 - -
Trre1g04147 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 106 IPR013083 -
Trre1g04147 135 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Trre1g04147 135 Pfam Ring finger domain 56 99 IPR001841 -
Trre1g04147 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 41 111 - -
Trre1g04147 135 SUPERFAMILY RING/U-box 47 109 - -
Trre1g04147 135 SMART ring_2 57 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04147 Trre-Chr1 46633687 46634094 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04147 52 115 C3H Transcription Factor Family AT2G04240 46.875 1.95e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04147 K16282 - jre:108981879 129.413