Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04144 ATGGGCCGTGTAGATGCAGCTGGTTCCAAGGGGAAGAAGAAGGCAGTGATAACATTCACCATTGATTGTGCCAAACCAGTTGAAGACAAGATCATGGACATTGCCTCTCTCGAAAAGTTTCTTCAAGAGAGGATTAAGGTTGGTGGTAAACCTGGTGCTCTTGGTGATGCTGTTACTGTTTCACGTGAGAAAAGCAAGATCACTGTTACTTCTGATACCAACTTCTCCAAACGGTATCTCAAGTACTTAACTAAGAAGTATTTGAAGAAACACAATGTACGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGACAGAAATGTTTACGAATTGAGGTACTTCAACATTGCTGAAAATGAAGGAGAGGAAGAAGATTAA 378 0.4101 MGRVDAAGSKGKKKAVITFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSKITVTSDTNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04144 125 Gene3D - 6 125 IPR038526 -
Trre1g04144 125 PANTHER 60S RIBOSOMAL PROTEIN L22 6 125 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre1g04144 125 FunFam 60S ribosomal protein L22-2 5 125 - -
Trre1g04144 125 Pfam Ribosomal L22e protein family 16 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04144 Trre-Chr1 46618863 46620018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04144 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.000 5.06e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04144 K02891 - nnu:104598935 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04144 1 46618863 46620018 Trre1g04144 1 46618863 46620018 ECH
Trre1g04144 1 46618863 46620018 Trre1g04553 1 51602763 51604155 ECH