Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04140 ATGTCGAAGAGAAGTCGCGGTGGATCCGCGGGTAACAAGTTCAGGATGTCACTGGGTCTACCAGTGGCGGCGACGGTGAACTGCGCCGACAATACCGGAGCTAAGAATCTCTACATCATTTCCGTGAAAGGTATTAAGGGAAGATTGAACCGTTTGCCTTCAGCTTGTGTTGGTGATATGGTGATGGCTACTGTGAAGAAGGGAAAGCGTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATCGTTCGTTAG 252 0.504 MSKRSRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKRDLRKKVLPAVIVR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04140 83 Pfam Ribosomal protein L14p/L23e 22 83 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre1g04140 83 Gene3D Ribosomal protein L14 1 83 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre1g04140 83 SUPERFAMILY Ribosomal protein L14 11 83 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trre1g04140 83 SMART Ribosomal_L14_2 19 83 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trre1g04140 83 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 83 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04140 Trre-Chr1 46560070 46560321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04140 1 83 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 95.181 8.79e-52 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04140 K02894 - tcc:18613077 160.229