Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04127 ATGATCTTCATCATTATCACATTCTTGATTACTTTATCATCATCATCACAAAGGACTCACATTTTGAGTGTTGGTGCTTTAATCAATGCTGCTGGAAGTTTCCATGTTCATAGTTTACAAGAAAGCTATTTCTTGAAGGAGAAAAATGAAAATTTTCAAGTTGAGAAAATTTCAGGTTTGGATGAGAATCAAGTGAAACATGGTTTTATAGTTGAAAAGTTTAGATCTTTACTTGGTTTAAAGAGTTTCCACAAAAGGGTACATTCTAAATCCAATGGTGATTCTGATTCTGATTCTGATCAGTTTCTTACACCTTCACCTTCTCCATCACAAAACATTGAAGCTGAAGTTGCTCTAGCTCCAGCTCCAGCTCCGGCTCCAACACCTTCTGGATTAATCCATTTTCATCCTCATTCTCATCATCAAAAAAATCACTTTCATTGGAACAATCCAGCTAAAAAGTTTCATCATGATGATAGAGGCAAAGCTAAAAAGATACTAGTAGCTGTTTTTGTTTCAGTTGGAATTGTTTCATTGGTTAGTGTTTTTGGTTTAATCTTATTCTGCAGGAAAAAGTTCACAAATCACAAAAAGAAGAAACCAAAAAGAACAATGCCTATAGGTAATAAGGTGAGTTTAAATCAAGGATTAGATCTATTTTATCTTGATGCATTAGGTGAAGATATTGAACAAAATGGTTGCACAACATTGAAAAAGACTAGTGATGATGAAAATTATAATGTTAGTAGTTCTTTTACTAAGGAAATTGAACTAGTAAAAAAAAATGAAATTGATTATGTTGATGAGAAAAATTCTTGTACTACTAGTATTGTTGATAAAATTGTTAATGAAAATTGTGATGATTCATCAGAAGATGAAAGTTTTCATTCATTTGTTGATTCACAATCAAATACAAGACTTTCTAATGCTTCAATTTGTAGTCTTAGTGATCATGACACACATTCTTTGGTGTCACCTCAAAATTCATTTTCATTATTACCAAACCAACAATTTCATACTTGTCAAAAAAACACAAATGAAAAAGACCAAGAAATTGAAAATGAAACATTTGTTCAATCTCCTCAAATATCTACTTTCTCACCACCACCTCCTCCACCACCAACACCGCCGCCGCCTCCACCACCATTGAAAATGCCACTTTTTTCTTTACATTCACTAACATCTTCATCAAGAGTTTCATCACATTCTCCACTTTCATTGACATCTCATACATTATCTTCACCTATAAATTCAGAATCTTGTTCTTCAAGATCAAATCAAAGTCCTGAAAAAGATTCATTTTCTCCATTTCCATCTAACCTCACAAAATCTTCACCTCTTAGCAATATTCCTCCACCACCATTCCCACCTCCATTTCCAAAAGGAAATAATAGTAACAATAATAATGGAAAAACACCAGCTCCTCCACCATATCAATTCCCTCAATCACCACTTGGTAAAGATGGTACACCATTGGCTAAACTCAAACCACTTCATTGGGACAAAGTAAGAGCTGCACCAAATCGTACAATGGTTTGGGACAAACTAAGATCAAGCTCATTTGAGTTGGATGAGGAAATGATTGAGTCACTTTTTGGCTATAATTTACAAAGTTCAATTAATAATAATGATGAAAGTAAGAGCAAAACACCATCTCCAGGGAAGCATGTACTCGATCCAAAAAGGTTGCAGAACATAACAATACTATCAAAAGCTTTGAATGTGACAGCTGAACAAGTATGTGATGCTCTAATGCAAGGGAAGGGATTGTCTTTGCAACAATTAGAGGCACTAGTGAAAATGGTACCTACCAAAGAAGAAGAGGCTAAACTCTTCAATTATAAAGGCAACATCAATGAATTGGGGTCCGCAGAAAGGTTTGTGAGAGCAGTGCTTAGTGTACCATTTGCTTTTCAAAGAGTAGAAACCATGCTTTACAAAGAGACTTTTGATGATGAAGTTGTTCACCTAAGGAACTCTTTTTCAATGCTTGAGGAGGCATGCAAGGAGCTAAGATCAAGCAGACTCTTCTTGAAACTACTAGAAGCAGTACTGAAAACAGGAAACCGAATGAACGTCGGAACAATAAGAGGAGGTGCAAGAGCATTCAAACTGGATGCTCTACTGAAGCTAGCAGATGTTAAAGGAACAGATGGAAAAACAACCTTACTCCATTTTGTTGTTCAAGAAATTGTCCGTTCAGAAGGAATAAGAGTTTCAGATAGCATAATGGGAAAAATAAGCCAAAAAAGTAACAAAAACAGAACAGAAGAAGAAAAAGAAGAAGATTACAGAAAAATGGGACTAGAACTAGTTTCTGGTCTAAGTACTGAATTGTACAATGTTAAAAAGACAGCAACAATTGACTTAGATGTTCTTGCTAGTTCAGTTTCAAATCTATATGATGGAATGATTATGCTGAAACAATTAGTGGAAAATGAGTTGCATGAAGATGAAATGAGTCATAATTTTGTGATGACTATGAAGATATTCTTGCAATATGTTGATGGAAATTTGAAAGAGTTGAGAGGTGAAGAAGATAGAGTGATAGCACGTGTTAAAGAAATAACTGAGTATTTTCATGGTGATGTTAGTAAAGAAGATAATCCATTAAGGATATTTGTGATAGTGAGAGATTTTATGGGAATGTTGGATCATGTTTGTAAAGAGCTTAGAAAGTCTAAATGTTCACGTACTCCAAATCCTCTTGCTCCTTTCAGATAG 2724 0.3451 MIFIIITFLITLSSSSQRTHILSVGALINAAGSFHVHSLQESYFLKEKNENFQVEKISGLDENQVKHGFIVEKFRSLLGLKSFHKRVHSKSNGDSDSDSDQFLTPSPSPSQNIEAEVALAPAPAPAPTPSGLIHFHPHSHHQKNHFHWNNPAKKFHHDDRGKAKKILVAVFVSVGIVSLVSVFGLILFCRKKFTNHKKKKPKRTMPIGNKVSLNQGLDLFYLDALGEDIEQNGCTTLKKTSDDENYNVSSSFTKEIELVKKNEIDYVDEKNSCTTSIVDKIVNENCDDSSEDESFHSFVDSQSNTRLSNASICSLSDHDTHSLVSPQNSFSLLPNQQFHTCQKNTNEKDQEIENETFVQSPQISTFSPPPPPPPTPPPPPPPLKMPLFSLHSLTSSSRVSSHSPLSLTSHTLSSPINSESCSSRSNQSPEKDSFSPFPSNLTKSSPLSNIPPPPFPPPFPKGNNSNNNNGKTPAPPPYQFPQSPLGKDGTPLAKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQSSINNNDESKSKTPSPGKHVLDPKRLQNITILSKALNVTAEQVCDALMQGKGLSLQQLEALVKMVPTKEEEAKLFNYKGNINELGSAERFVRAVLSVPFAFQRVETMLYKETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSNKNRTEEEKEEDYRKMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLYDGMIMLKQLVENELHEDEMSHNFVMTMKIFLQYVDGNLKELRGEEDRVIARVKEITEYFHGDVSKEDNPLRIFVIVRDFMGMLDHVCKELRKSKCSRTPNPLAPFR 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04127 907 MobiDBLite consensus disorder prediction 89 110 - -
Trre1g04127 907 PANTHER FORMIN-RELATED 404 895 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre1g04127 907 Pfam Formin Homology 2 Domain 488 884 IPR015425 -
Trre1g04127 907 SMART it6_source 485 899 IPR015425 -
Trre1g04127 907 MobiDBLite consensus disorder prediction 364 386 - -
Trre1g04127 907 MobiDBLite consensus disorder prediction 358 492 - -
Trre1g04127 907 MobiDBLite consensus disorder prediction 389 446 - -
Trre1g04127 907 MobiDBLite consensus disorder prediction 447 461 - -
Trre1g04127 907 SUPERFAMILY Formin homology 2 domain (FH2 domain) 498 895 - -
Trre1g04127 907 Gene3D Formin, FH2 domain 507 899 IPR042201 -
Trre1g04127 907 ProSiteProfiles Formin homology-2 (FH2) domain profile. 485 907 IPR015425 -
Trre1g04127 907 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04127 Trre-Chr1 46391806 46396169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04127 142 907 FH2 protein (formin) Gene Family AT3G05470 53.333 0.0 686