Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04126 ATGAGTTTTAGTTCTGAGTTTCTTACAATGATCTTCATCATTATCACATTCTTGATTACTTTATCATCATCATCACAAAGGACTCACATTTTGAGTGTTGGTGCTTTAATCAATGCTGCTGGAAGTTTCCATGTTCATAGTTTACAAGAAAGCTATTTCTTGAAGGAGAAAAATGAAAATTTTCAAGTTGAGAAAATTTCAGGTTTGGATGAGAATCAAGTGAAACATGGTTTTATAGTTGAAAAGTTTAGATCTTTACTTGGTTTAAAGAGTTTCCACAAAAGGGTACATTCTAAATCCAATGGTGATTCTGATTCTGATTCTGATCAGTTTCTTACACCTTCACCTTCTCCATCACAAAACATTGAAGCTGAAGTTGCTCTAGCTCCAGCTCCAGCTCCGGCTCCAACACCTTCTGGATTAATCCATTTTCATCCTCATTCTCATCATCAAAAAAATCACTTTCATTGGAACAATCCAGCTAAAAAGTTTCATCATGATGATAGAGGCAAAGCTAAAAAGATACTAGTAGCTGTTTTTGTTTCAGTTGGAATTGTTTCATTGGTTAGTGTTTTTGGTTTAATCTTATTCTGCAGGAAAAAGTTCACAAATCACAAAAAGAAGAAACCAAAAAGAACAATGCCTATAGGTAATAAGGTGAGTTTAAATCAAGGATTAGATCTATTTTATCTTGATGCATTAGGTGAAGATATTGAACAAAATGGTTGCACAACATTGAAAAAGACTAGTGATGATGAAAATTATAATGTTAGTAGTTCTTTTACTAAGGAAATTGAACTAGTAAAAAAAAATGAAATTGATTATGTTGATGAGAAAAATTCTTGTACTACTAGTATTGTTGATAAAATTGTTAATGAAAATTGTGATGATTCATCAGAAGATGAAAGTTTTCATTCATTTGTTGATTCACAATCAAATACAAGACTTTCTAATGCTTCAATTTGTAGTCTTAGTGATCATGACACACATTCTTTGGTGTCACCTCAAAATTCATTTTCATTATTACCAAACCAACAATTTCATACTTGTCAAAAAAACACAAATGAAAAAGACCAAGAAATTGAAAATGAAACATTTGTTCAATCTCCTCAAATATCTACTTTCTCACCACCACCTCCTCCACCACCAACACCGCCGCCGCCTCCACCACCATTGAAAATGCCACTTTTTTCTTTACATTCACTAACATCTTCATCAAGAGTTTCATCACATTCTCCACTTTCATTGACATCTCATACATTATCTTCACCTATAAATTCAGAATCTTGTTCTTCAAGATCAAATCAAAGTCCTGAAAAAGATTCATTTTCTCCATTTCCATCTAACCTCACAAAATCTTCACCTCTTAGCAATATTCCTCCACCACCATTCCCACCTCCATTTCCAAAAGGAAATAATAGTAACAATAATAATGGAAAAACACCAGCTCCTCCACCATATCAATTCCCTCAATCACCACTTGGTAAAGATGGTACACCATTGGCTAAACTCAAACCACTTCATTGGGACAAAGTAAGAGCTGCACCAAATCGTACAATGGTTTGGGACAAACTAAGATCAAGCTCATTTGAGTTGGATGAGGAAATGATTGAGTCACTTTTTGGCTATAATTTACAAAGTTCAATTAATAATAATGATGAAAGTAAGAGCAAAACACCATCTCCAGGGAAGCATGTACTCGATCCAAAAAGGTTGCAGAACATAACAATACTATCAAAAGCTTTGAATGTGACAGCTGAACAAGTATGTGATGCTCTAATGCAAGGGAAGGGATTGTCTTTGCAACAATTAGAGGCACTAGTGAAAATGGTACCTACCAAAGAAGAAGAGGCTAAACTCTTCAATTATAAAGGCAACATCAATGAATTGGGGTCCGCAGAAAGGTTTGTGAGAGCAGTGCTTAGTGTACCATTTGCTTTTCAAAGAGTAGAAACCATGCTTTACAAAGAGACTTTTGATGATGAAGTTGTTCACCTAAGGAACTCTTTTTCAATGCTTGAGGAGGCATGCAAGGAGCTAAGATCAAGCAGACTCTTCTTGAAACTACTAGAAGCAGTACTGAAAACAGGAAACCGAATGAACGTCGGAACAATAAGAGGAGGTGCAAGAGCATTCAAACTGGATGCTCTACTGAAGCTAGCAGATGTTAAAGGAACAGATGGAAAAACAACCTTACTCCATTTTGTTGTTCAAGAAATTGTCCGTTCAGAAGGAATAAGAGTTTCAGATAGCATAATGGGAAAAATAAGCCAAAAAAGTAACAAAAACAGAACAGAAGAAGAAAAAGAAGAAGATTACAGAAAAATGGGACTAGAACTAGTTTCTGGTCTAAGTACTGAATTGTACAATGTTAAAAAGACAGCAACAATTGACTTAGATGTTCTTGCTAGTTCAGTTTCAAATCTATATGATGGAATGATTATGCTGAAACAATTAGTGGAAAATGAGTTGCATGAAGATGAAATGAGTCATAATTTTGTGATGACTATGAAGATATTCTTGCAATATGTTGATGGAAATTTGAAAGAGTTGAGAGGTGAAGAAGATAGAGTGATAGCACGTGTTAAAGAAATAACTGAGTATTTTCATGGTGATGTTAGTAAAGAAGATAATCCATTAAGGATATTTGTGATAGTGAGAGATTTTATGGGAATGTTGGATCATGTTTGTAAAGAGCTTAGAAAGTCTAAATGTTCACGTACTCCAAATCCTCTTGCTCCTTTCAGATAG 2751 0.3446 MSFSSEFLTMIFIIITFLITLSSSSQRTHILSVGALINAAGSFHVHSLQESYFLKEKNENFQVEKISGLDENQVKHGFIVEKFRSLLGLKSFHKRVHSKSNGDSDSDSDQFLTPSPSPSQNIEAEVALAPAPAPAPTPSGLIHFHPHSHHQKNHFHWNNPAKKFHHDDRGKAKKILVAVFVSVGIVSLVSVFGLILFCRKKFTNHKKKKPKRTMPIGNKVSLNQGLDLFYLDALGEDIEQNGCTTLKKTSDDENYNVSSSFTKEIELVKKNEIDYVDEKNSCTTSIVDKIVNENCDDSSEDESFHSFVDSQSNTRLSNASICSLSDHDTHSLVSPQNSFSLLPNQQFHTCQKNTNEKDQEIENETFVQSPQISTFSPPPPPPPTPPPPPPPLKMPLFSLHSLTSSSRVSSHSPLSLTSHTLSSPINSESCSSRSNQSPEKDSFSPFPSNLTKSSPLSNIPPPPFPPPFPKGNNSNNNNGKTPAPPPYQFPQSPLGKDGTPLAKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQSSINNNDESKSKTPSPGKHVLDPKRLQNITILSKALNVTAEQVCDALMQGKGLSLQQLEALVKMVPTKEEEAKLFNYKGNINELGSAERFVRAVLSVPFAFQRVETMLYKETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSNKNRTEEEKEEDYRKMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLYDGMIMLKQLVENELHEDEMSHNFVMTMKIFLQYVDGNLKELRGEEDRVIARVKEITEYFHGDVSKEDNPLRIFVIVRDFMGMLDHVCKELRKSKCSRTPNPLAPFR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04126 916 SMART it6_source 494 908 IPR015425 -
Trre1g04126 916 MobiDBLite consensus disorder prediction 105 119 - -
Trre1g04126 916 Gene3D Formin, FH2 domain 516 908 IPR042201 -
Trre1g04126 916 Pfam Formin Homology 2 Domain 497 893 IPR015425 -
Trre1g04126 916 ProSiteProfiles Formin homology-2 (FH2) domain profile. 494 916 IPR015425 -
Trre1g04126 916 MobiDBLite consensus disorder prediction 98 119 - -
Trre1g04126 916 MobiDBLite consensus disorder prediction 367 501 - -
Trre1g04126 916 MobiDBLite consensus disorder prediction 373 395 - -
Trre1g04126 916 PANTHER FORMIN-RELATED 413 904 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre1g04126 916 MobiDBLite consensus disorder prediction 398 455 - -
Trre1g04126 916 MobiDBLite consensus disorder prediction 456 470 - -
Trre1g04126 916 SUPERFAMILY Formin homology 2 domain (FH2 domain) 507 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04126 Trre-Chr1 46391806 46396196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04126 151 916 FH2 protein (formin) Gene Family AT3G05470 53.333 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04126 - - gmx:100793761 976.852