Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04116 ATGGTGACAGGAACAAACGAAAATGCACCAAAAGAAACCATACGCGAATACATACAAGAAGAAAGTGAAGAACAAAATTTCGAAGAGCTAGGGTTAGACGCACGTCTCGTTCGGGCTTTACTGAAGAAAGGAATCGAGAAACCTACTCCAATTCAACACGTAGCGATTCCATTGATTCTGGAAGGTAAAGATGTTGTTGCTAGAGCAAAGACAGGTTCTGGAAAAACACTTGCGTATCTTCTTCCATTGCTTCAGAAATTGTTTACTAGTAATGCTGATAGGAAGAAGTTAGCTCCGAATGTTTTCGTTCTTGTTCCTTCTCGTGAACTTTGTCAACAGATATATGTGGAAGTGAAGTCATTGCTTGAGTTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTACTGACTTGCAAGCAGCTCTGGTTGGTCCTCCTGATGTTTTGATCTCCACTCCTGCTTGCATAGCTAAGTGTTTGTCCAACTCAATACTTGATGCAGCATCTATTAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATTAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCAGCAACATCAAGTGCTGATGTTGACAAACTAAAAAAGTTGATTTTACACAATCCCTTTATTTTGACTTTGCCTGAAGTCGGAAACCACAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATTTCTTGTCCCGCCAATGATAAGTTGCTGTACATCCTTGCTATGTTGAAGTTGGAGTTGGTCCAAAAAAAAGTTCTGATATTCACCAATAACATAGACACGAGTTTCAGATTGAAACTATTCTTAGAAAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAACTCCCGTCTTCATATTCTTGAGGAATTCAATGCTGGCCTATTTGATTATCTAATTGCAACAGATATCAGCCAGTCAACGGATAAGGTTGAAGCACCTAAGGAAAATATTGTTGGATCCCAAAAGTCTAGAAAGTACAAGAAGCTAAAATTAGATTCCGAATTCGGAGTAGTAAGGGGAATTGATTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAGTGTGGCCGGATACGTACACCGAATTGGACGTACTGGAAGAGCATATAGTTCAGGTGCATCTATCTCCTTGGTTTCTTCAGATGAGATGGATATCTTCGAAGAAGTACGATCTTTTGTTGGGGACAATGAAAACAATGGCTCAAACACAATTGCTGAGTTTCCCTTACTCAGCAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGCTGAAAGCCCACTTTGAAACTAATCCAAAAGACCTAGATCTATTGAAACATGACAAAGTTTTGAGCAAGAATGCCCCTCCTCCACACCTTCGGGATGTCCCGGATTACCTAATAGACAAAACAACAAAAGAGGCAAGAGACATGGTTAAGCTTACAAGAGATGCAATGGGTAATAATAATCGCCGACGGGGATCAAAGAGAAAATCAAGAAAAGGTGGTGACCCTCTGATGGCCATCTCTACTGGGGTATCAAAAAGACCACACAAAGCTTTTAAAAAGGACGGTGGAAGCAATGGCAAAAGCAGTGATAGACAAAAACACAAAAAGACAAAGGCATTTTGA 1812 0.3996 MVTGTNENAPKETIREYIQEESEEQNFEELGLDARLVRALLKKGIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTSNADRKKLAPNVFVLVPSRELCQQIYVEVKSLLELCRVQLKVVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSILDAASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTDKVEAPKENIVGSQKSRKYKKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVAGYVHRIGRTGRAYSSGASISLVSSDEMDIFEEVRSFVGDNENNGSNTIAEFPLLSKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNAPPPHLRDVPDYLIDKTTKEARDMVKLTRDAMGNNNRRRGSKRKSRKGGDPLMAISTGVSKRPHKAFKKDGGSNGKSSDRQKHKKTKAF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04116 603 Pfam Helicase conserved C-terminal domain 265 408 IPR001650 -
Trre1g04116 603 Gene3D - 241 446 IPR027417 -
Trre1g04116 603 Coils Coil 478 498 - -
Trre1g04116 603 CDD DEADc_DDX56 32 239 - -
Trre1g04116 603 Gene3D - 4 239 IPR027417 -
Trre1g04116 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Trre1g04116 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 454 IPR001650 -
Trre1g04116 603 MobiDBLite consensus disorder prediction 541 603 - -
Trre1g04116 603 SMART helicmild6 294 408 IPR001650 -
Trre1g04116 603 Pfam DEAD/DEAH box helicase 49 226 IPR011545 GO:0003676|GO:0005524
Trre1g04116 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 433 IPR027417 -
Trre1g04116 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 237 IPR014001 -
Trre1g04116 603 PANTHER RNA HELICASE 21 538 - -
Trre1g04116 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 238 IPR027417 -
Trre1g04116 603 SMART ultradead3 44 257 IPR014001 -
Trre1g04116 603 MobiDBLite consensus disorder prediction 577 593 - -
Trre1g04116 603 CDD SF2_C_DEAD 254 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04116 Trre-Chr1 46327949 46335548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04116 26 448 Eukaryotic Initiation Factors Gene Family AT3G19760 25.059 2.82e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04116 K14810 - gmx:100800749 960.288