Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04113 ATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCCAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCCGATGTTTATTTGGAAAGTAAGAGTGATGATTTGGATGCTACACTTTCTACTACTATTATTAACAATAATCGTTCTTCTTCTGGGAAGAAGTTGTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATCGGTTCATCTGCCGGTGGTAATACTTCGAATCTTAGTGGTGGTGACGGTGATGGTGTTGATGATGAGGATGCTGTTATGTTAGAAGAGAATTGGGTTTCCAATGATGAGATGGCTGGTTCTGGTGACGATGATTCAGCTGGGAAAACGACGCGCACGAGCCTTGATAGGAATGCTGCTACTGAATATTCTGATGGAGTGTCGGATTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGAAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCAAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGCAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGAGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTACTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGGTGCAGAATGAGTGATGTTGGTCCACCAGAAACCAGATTGAATGCCCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGCGAGCCCATTATTGTTAAGGAAGTATTTGATTGGTCATCCATGTCAAGCTGGGACCCACTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCTAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGGTTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCTGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTACGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTGCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAGGTGAAAGAATCTCATGGGGATCCAAATATATGTTCGAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCACGGGTTTGAAGTTTATTCTAGTGCTGGAGGAAATATGGTCAATTGTGAAATTACATCAAGACAAAATGGGGATGTCTCTAAGATACCACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCAGGAAGTCAGATGATATAGTAAGTGAATTTGTTACATGGCCTCTCTATGATGGAGCTATTTTTCTTGACAGACACCACAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCTAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATTAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2700 0.407 MPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDLDATLSTTIINNNRSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSNLSGGDGDGVDDEDAVMLEENWVSNDEMAGSGDDDSAGKTTRTSLDRNAATEYSDGVSDSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCQDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNEDGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVGPPETRLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKEVFDWSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCLDGSEVDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDHGFEVYSSAGGNMVNCEITSRQNGDVSKIPHPGVLWDVFRRQDVPKVTEYLKMHWKEFRKSDDIVSEFVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04113 899 Pfam JmjC domain, hydroxylase 716 808 IPR003347 -
Trre1g04113 899 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 37 863 IPR045109 GO:0032454|GO:0033169
Trre1g04113 899 SMART cupin_9 542 829 IPR003347 -
Trre1g04113 899 MobiDBLite consensus disorder prediction 78 96 - -
Trre1g04113 899 Gene3D Cupin 423 838 - -
Trre1g04113 899 MobiDBLite consensus disorder prediction 78 159 - -
Trre1g04113 899 ProSiteProfiles Zinc finger RING-type profile. 160 207 IPR001841 -
Trre1g04113 899 ProSiteProfiles JmjC domain profile. 535 829 IPR003347 -
Trre1g04113 899 SUPERFAMILY Clavaminate synthase-like 444 839 - -
Trre1g04113 899 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 155 220 IPR018866 -
Trre1g04113 899 MobiDBLite consensus disorder prediction 127 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04113 Trre-Chr1 46297852 46303220 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g04113 JmjC 1.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04113 K15601 - gmx:100801287 1414.05