Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04112 ATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCCAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCCGATGTTTATTTGGAAAGTAAGAGTGATGATTTGGATGCTACACTTTCTACTACTATTATTAACAATAATCGTTCTTCTTCTGGGAAGAAGTTGTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATCGGTTCATCTGCCGGTGGTAATACTTCGAATCTTAGTGGTGGTGACGGTGATGGTGTTGATGATGAGGATGCTGTTATGTTAGAAGAGAATTGGGTTTCCAATGATGAGATGGCTGGTTCTGGTGACGATGATTCAGCTGGGAAAACGACGCGCACGAGCCTTGATAGGAATGCTGCTACTGAATATTCTGATGGAGTGTCGGATTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGAAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCAAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGCAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGAGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTACTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGGTGCAGAATGAGTGATGTTGGTCCACCAGAAACCAGATTGAATGCCCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGCGAGCCCATTATTGTTAAGGAAGTATTTGATTGGTCATCCATGTCAAGCTGGGACCCACTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCTAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGGTTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCTGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTACGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTGCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAGGTGAAAGAATCTCATGGGGATCCAAATATATGTTCGAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCACGGGTTTGAAGTTTATTCTAGTGCTGGAGGAAATATGGTCAATTGTGAAATTACATCAAGACAAAATGGGGATGTCTCTAAGATACCACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCAGGAAGTCAGATGATATAGTTACATGGCCTCTCTATGATGGAGCTATTTTTCTTGACAGACACCACAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCTAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATTAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2688 0.4077 MPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDLDATLSTTIINNNRSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSNLSGGDGDGVDDEDAVMLEENWVSNDEMAGSGDDDSAGKTTRTSLDRNAATEYSDGVSDSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCQDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNEDGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVGPPETRLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKEVFDWSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCLDGSEVDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDHGFEVYSSAGGNMVNCEITSRQNGDVSKIPHPGVLWDVFRRQDVPKVTEYLKMHWKEFRKSDDIVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04112 895 ProSiteProfiles JmjC domain profile. 535 825 IPR003347 -
Trre1g04112 895 SMART cupin_9 542 825 IPR003347 -
Trre1g04112 895 MobiDBLite consensus disorder prediction 78 96 - -
Trre1g04112 895 MobiDBLite consensus disorder prediction 78 159 - -
Trre1g04112 895 ProSiteProfiles Zinc finger RING-type profile. 160 207 IPR001841 -
Trre1g04112 895 Pfam JmjC domain, hydroxylase 716 804 IPR003347 -
Trre1g04112 895 Gene3D Cupin 423 834 - -
Trre1g04112 895 SUPERFAMILY Clavaminate synthase-like 444 835 - -
Trre1g04112 895 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 155 220 IPR018866 -
Trre1g04112 895 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 37 859 IPR045109 GO:0032454|GO:0033169
Trre1g04112 895 MobiDBLite consensus disorder prediction 127 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04112 Trre-Chr1 46297852 46303220 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g04112 JmjC 1.7e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04112 K15601 - gmx:100801287 1404.81