Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04111 ATGGATCACGCAAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGAAGATTTACGTTGCAAGAGATCAGACGGTAAACAATGGAGATGTACAGCTTTATCGATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCCAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCCGATGTTTATTTGGAAAGTAAGAGTGATGATTTGGATGCTACACTTTCTACTACTATTATTAACAATAATCGTTCTTCTTCTGGGAAGAAGTTGTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATCGGTTCATCTGCCGGTGGTAATACTTCGAATCTTAGTGGTGGTGACGGTGATGGTGTTGATGATGAGGATGCTGTTATGTTAGAAGAGAATTGGGTTTCCAATGATGAGATGGCTGGTTCTGGTGACGATGATTCAGCTGGGAAAACGACGCGCACGAGCCTTGATAGGAATGCTGCTACTGAATATTCTGATGGAGTGTCGGATTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGAAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCAAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGCAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGAGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTACTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGGTGCAGAATGAGTGATGTTGGTCCACCAGAAACCAGATTGAATGCCCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGCGAGCCCATTATTGTTAAGGAAGTATTTGATTGGTCATCCATGTCAAGCTGGGACCCACTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCTAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGGTTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCTGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTACGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTGCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAGGTGAAAGAATCTCATGGGGATCCAAATATATGTTCGAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCACGGGTTTGAAGTTTATTCTAGTGCTGGAGGAAATATGGTCAATTGTGAAATTACATCAAGACAAAATGGGGATGTCTCTAAGATACCACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCAGGAAGTCAGATGATATAGTAAGTGAATTTGTTACATGGCCTCTCTATGATGGAGCTATTTTTCTTGACAGACACCACAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCTAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATTAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2805 0.4071 MDHARSNNIDENVGIPEDLRCKRSDGKQWRCTALSMPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDLDATLSTTIINNNRSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSNLSGGDGDGVDDEDAVMLEENWVSNDEMAGSGDDDSAGKTTRTSLDRNAATEYSDGVSDSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCQDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNEDGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVGPPETRLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKEVFDWSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCLDGSEVDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDHGFEVYSSAGGNMVNCEITSRQNGDVSKIPHPGVLWDVFRRQDVPKVTEYLKMHWKEFRKSDDIVSEFVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04111 934 Gene3D Cupin 458 873 - -
Trre1g04111 934 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 190 255 IPR018866 -
Trre1g04111 934 MobiDBLite consensus disorder prediction 113 131 - -
Trre1g04111 934 ProSiteProfiles Zinc finger RING-type profile. 195 242 IPR001841 -
Trre1g04111 934 ProSiteProfiles JmjC domain profile. 570 864 IPR003347 -
Trre1g04111 934 Pfam JmjC domain, hydroxylase 751 843 IPR003347 -
Trre1g04111 934 MobiDBLite consensus disorder prediction 113 194 - -
Trre1g04111 934 MobiDBLite consensus disorder prediction 162 194 - -
Trre1g04111 934 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Trre1g04111 934 SUPERFAMILY Clavaminate synthase-like 479 874 - -
Trre1g04111 934 SMART cupin_9 577 864 IPR003347 -
Trre1g04111 934 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 898 IPR045109 GO:0032454|GO:0033169
Trre1g04111 934 Pfam WRC 16 56 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04111 Trre-Chr1 46297852 46303325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04111 16 56 GRF Transcription Factor Family AT3G13960 48.780 7.42e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g04111 JmjC 1.3e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04111 K15601 - gmx:100801287 1469.91