Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04110 ATGGATCACGCAAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGAAGATTTACGTTGCAAGAGATCAGACGGTAAACAATGGAGATGTACAGCTTTATCGATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCCAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCCGATGTTTATTTGGAAAGTAAGAGTGATGATTTGGATGCTACACTTTCTACTACTATTATTAACAATAATCGTTCTTCTTCTGGGAAGAAGTTGTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATCGGTTCATCTGCCGGTGGTAATACTTCGAATCTTAGTGGTGGTGACGGTGATGGTGTTGATGATGAGGATGCTGTTATGTTAGAAGAGAATTGGGTTTCCAATGATGAGATGGCTGGTTCTGGTGACGATGATTCAGCTGGGAAAACGACGCGCACGAGCCTTGATAGGAATGCTGCTACTGAATATTCTGATGGAGTGTCGGATTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGAAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTAGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCAAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGCAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGAGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTACTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGGTGCAGAATGAGTGATGTTGGTCCACCAGAAACCAGATTGAATGCCCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGCGAGCCCATTATTGTTAAGGAAGTATTTGATTGGTCATCCATGTCAAGCTGGGACCCACTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCTAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGGTTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCTGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTACGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTGCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAGGTGAAAGAATCTCATGGGGATCCAAATATATGTTCGAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCACGGGTTTGAAGTTTATTCTAGTGCTGGAGGAAATATGGTCAATTGTGAAATTACATCAAGACAAAATGGGGATGTCTCTAAGATACCACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCAGGAAGTCAGATGATATAGTTACATGGCCTCTCTATGATGGAGCTATTTTTCTTGACAGACACCACAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCTAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATTAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2793 0.4078 MDHARSNNIDENVGIPEDLRCKRSDGKQWRCTALSMPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDLDATLSTTIINNNRSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSNLSGGDGDGVDDEDAVMLEENWVSNDEMAGSGDDDSAGKTTRTSLDRNAATEYSDGVSDSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCQDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNEDGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVGPPETRLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKEVFDWSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCLDGSEVDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDHGFEVYSSAGGNMVNCEITSRQNGDVSKIPHPGVLWDVFRRQDVPKVTEYLKMHWKEFRKSDDIVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04110 930 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 894 IPR045109 GO:0032454|GO:0033169
Trre1g04110 930 ProSiteProfiles JmjC domain profile. 570 860 IPR003347 -
Trre1g04110 930 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 190 255 IPR018866 -
Trre1g04110 930 MobiDBLite consensus disorder prediction 113 131 - -
Trre1g04110 930 ProSiteProfiles Zinc finger RING-type profile. 195 242 IPR001841 -
Trre1g04110 930 Pfam JmjC domain, hydroxylase 751 839 IPR003347 -
Trre1g04110 930 Gene3D Cupin 458 869 - -
Trre1g04110 930 MobiDBLite consensus disorder prediction 113 194 - -
Trre1g04110 930 Pfam WRC 16 56 IPR014977 -
Trre1g04110 930 MobiDBLite consensus disorder prediction 162 194 - -
Trre1g04110 930 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Trre1g04110 930 SMART cupin_9 577 860 IPR003347 -
Trre1g04110 930 SUPERFAMILY Clavaminate synthase-like 479 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04110 Trre-Chr1 46297852 46303325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04110 16 56 GRF Transcription Factor Family AT3G13960 48.780 7.64e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g04110 JmjC 1.8e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04110 K15601 - gmx:100801287 1460.66