Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04104 ATGGCACCCACAAGGAAATCTAGAAGTGTGAATAAGCGATTCGCAAACGACGTTTCTCCAGAGAAAGATGGAGTTAGCTCAAATAAAAACAAACATCGGAAGAAGAAATTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTACAGCGATTCTATGAGGCATACAGAAAGTATGGGAAAGATTGGAAGAAGGTTGCTGCTGCTGTACGTAACAGATCCATTGAAATGGTTGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCACGGCTTCTGTTGTAGGTCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGACAGTGACAGTGAAAGGGAGAGCAATGATGCCCCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCAAAGGATCCTGTCCAGTCCCAGTCTGTAACTTCCGGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCTGTTGGGAAAAGGACACCCCGAGTCCCAGTTTACCACTCTTACAAGAAAGATGAAAGGGAGGATTATGTTTCGCCTAATAAAAGAAGCTTGAAGTCCACTGATGATGCTAATGATAAAGAAGTTGCACATGTAGCTTTGGCATTATCCAGGGCTGCACAAAGAGGAGGCTCTCCCCTTATTTCTCAAACACCACATAGGAGAGCAGCGCAGAAGTCCTCTCCTGCTCAGAGCTTGGAAAGAATGCACCAAATGTCAGAGACGGCCCGTGCCAAGTTTCGCGATGTTGTGGATGAAGAGTTTTTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGTTAGAGATACTAGTTCTTTGATAGACATGGAAGGAATGAGCAACACTAGAGTTCTTCTGAAGGGAGGAAAATTTTACAGAAAGAAGGAGAGAGTCGAAAATGTAGGAAATTACCAACTTGATGATGGAGGAGAAGCATGCAGCGGTACTGAAGAAGGACTTAGTTTTAGTTCTTTGAAGGAAAAGAATATGGAGGTTACTAATGAAAAGCTCGAGCAATTCTCTCCAAGTCAGCGGAAAAGAAGCAAAAAACTCTTCTGTGGAGATGAAATCCACGCCTTGAATGCTTTGGAAACCTTAGCCGATCTATCTCTAATGATGCCGACATCTAAAGGAGAATCTGAATCATCTATCCAGTTGAAGGGAGACCGAATGAATGTTGATAAAGATGATAAGTCTGCTTTACCTGAAGCAACATCAACAAGTCATAAGAGAAATAAAGCTAAACTTCGCGCGATCCCTGGAGCTGATGCTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATATCAAATGATACCAATGCTCTCTCTGAATCAAACGACCAGATTCCATTTGCTGATAGAACATGGAAAAGAAAGCAGAAGTCCATGAAAGCTGTAGATGATGAGAACAAACCGGTGATTAAAGGAAAACACACTGATCCGGTTTTTGCATCACCGAAACAATCTAAGATGGTCAAACCACCAGAGGTTTTCCTACGCGTTGATCAGAAGGGTTTAGCAATATCGTCAACTGCCGAAACTCCACTTTTGAGTGAAGTCAGTTCGCCAACTAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCACGCCTAAAGAGAGGTTTTCTGAGAATGTATTGAAAAGTCAACCTAATAAGTACTTTACCCAAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCGTGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCTCTTGGCAAACCACGAAGGTTCTCTGACAACTTTTTACGTGAGGAAAGACAAAAGCTTGAACAGTATCGAGACTCAGTGAGGAAACATTATTCTGAGCTGCGGGCTGGTATAAGAGATGGACTTCCGACAGATTTGGCGAGACCATTATATGTTGGTCAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGTCGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTCAAATCCATTCGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAACCTCTTTTATGATTACAGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAGTGCAGTCATCACCTATGAAGGTACGCTCCTCTTTAAGTGCTTCAGTAAAGCAAGGGAAGGGGGATGCCAACCATATCACTTCCCAGGCCAATATTGATAACCTCTGTGCACTAGCTGCTTGTGCTCAACCGTGTAAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTTGATAAAAAGGAGACAGTGTTAACAGAGCTCCGTAATGCAAATAGTGGCATATTGGATAACCAAAATGGCATAGAATGTTTAAAAGATTCCGAAGGTTTCAAGAAGCATTATGCCACGGTTTCTGATACCATGCTTCAATTGAGGCAACGTAATACCTACACAGACAACTCTCTGCCACCATGGATGAAGCCCAGAGCAAACTTCGAAGTTCATGATGAACTTCCCAGTGTGTTGGATAGTTCTATGTCACAAGAGTCTAGGTCAAATGTCATTGAAATCATTAAAGGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGGGTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGGCAGGCATTGGATTCTATTGATTATCAGCAGTTGTCCTCCAAGTACAGGTTGCCTGTGATAAGGTCGCAAGATCAAGTGAATGGCAGTTTTTATCATCATAATCAGTCAACTTGCAGAGCATCAGAGCCTTTACTTAATGATGCATCTGGTCCAAAACTGCATAAAGATTCTGAACAAGTTGATATTGAAATACCGTCGGAGCTCATTGCTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACTGAACGGCAATACCCTCCAGCGGATGTCGCCCGGATATTAGATTCTGCCGTTACCAGCCTGCAACCGAGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAAACCCAGATTTTAGCTCTCATCCCTACTTAG 3339 0.4235 MAPTRKSRSVNKRFANDVSPEKDGVSSNKNKHRKKKLSDKLGSQWSKEELQRFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEDSDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSGDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDEREDYVSPNKRSLKSTDDANDKEVAHVALALSRAAQRGGSPLISQTPHRRAAQKSSPAQSLERMHQMSETARAKFRDVVDEEFLEGSLESRGAENGEYVRDTSSLIDMEGMSNTRVLLKGGKFYRKKERVENVGNYQLDDGGEACSGTEEGLSFSSLKEKNMEVTNEKLEQFSPSQRKRSKKLFCGDEIHALNALETLADLSLMMPTSKGESESSIQLKGDRMNVDKDDKSALPEATSTSHKRNKAKLRAIPGADASTSKKSKLGKDISNDTNALSESNDQIPFADRTWKRKQKSMKAVDDENKPVIKGKHTDPVFASPKQSKMVKPPEVFLRVDQKGLAISSTAETPLLSEVSSPTKQRSRRKMIFQRPSTPKERFSENVLKSQPNKYFTQKEKLSSCLSSYLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSDNFLREERQKLEQYRDSVRKHYSELRAGIRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPSNPFDNMPEALRRQIGARKTSFMITEPQINGNSSFGGCEVQSSPMKVRSSLSASVKQGKGDANHITSQANIDNLCALAACAQPCKVMQHQAKEADIHALSELKRALDKKETVLTELRNANSGILDNQNGIECLKDSEGFKKHYATVSDTMLQLRQRNTYTDNSLPPWMKPRANFEVHDELPSVLDSSMSQESRSNVIEIIKGSRLRAHAMLDAAFQAWGQATKEGKDAITKIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYHHNQSTCRASEPLLNDASGPKLHKDSEQVDIEIPSELIASCVATLTMIQSCTERQYPPADVARILDSAVTSLQPSDPRNLPIYREIQMCMGRIKTQILALIPT 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04104 1112 MobiDBLite consensus disorder prediction 412 434 - -
Trre1g04104 1112 Pfam DIRP 605 706 IPR033471 -
Trre1g04104 1112 Gene3D - 4 97 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 476 492 - -
Trre1g04104 1112 Coils Coil 844 864 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 401 492 - -
Trre1g04104 1112 FunFam Protein ALWAYS EARLY 3 isoform A 3 97 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 185 212 - -
Trre1g04104 1112 PANTHER LIN-9 1 1112 IPR010561 GO:0006351|GO:0017053
Trre1g04104 1112 ProSiteProfiles Myb-like domain profile. 43 75 IPR001005 -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 230 253 - -
Trre1g04104 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 75 IPR017930 -
Trre1g04104 1112 Pfam Myb-like DNA-binding domain 43 80 IPR001005 -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 1 42 - -
Trre1g04104 1112 ProSiteProfiles SANT domain profile. 40 75 IPR017884 -
Trre1g04104 1112 SMART DIRP_2 606 707 IPR033471 -
Trre1g04104 1112 CDD SANT 45 79 IPR001005 -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 172 212 - -
Trre1g04104 1112 SUPERFAMILY Homeodomain-like 39 88 IPR009057 -
Trre1g04104 1112 Coils Coil 658 678 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 114 156 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 10 28 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 227 253 - -
Trre1g04104 1112 SMART sant 41 89 IPR001005 -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 460 475 - -
Trre1g04104 1112 MobiDBLite consensus disorder prediction 114 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04104 Trre-Chr1 46253185 46264957 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g04104 DIRP 6.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04104 - - gmx:100789533 1587.01