Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04084 ATGCTATCTCGCTATCAAAATCCTTTTCTCCGTAACGATTTTTTTTTTGAGTCTTCTCCGGCCGCCACACAATTAGATTGCAAATGTAGACTCTTTGCCTATACCAATGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCAGTTGTGTTTGCTAGGGTGTGCGGAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCTGCCATCACAGGAAATGATATCTTCGATTTCTTGGTTGACATTGTTCCTCAGGAGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTATTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCAAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCGTCAGAGCAACAACCATCGCCTTCAGATCAGTAG 543 0.442 MLSRYQNPFLRNDFFFESSPAATQLDCKCRLFAYTNDEDVKMISAEAPVVFARVCGMFILELTLRSWNHTEENKRRTLQKNDIAAAITGNDIFDFLVDIVPQEEDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04084 180 Pfam Core histone H2A/H2B/H3/H4 37 87 IPR007125 GO:0003677
Trre1g04084 180 Gene3D Histone, subunit A 34 102 IPR009072 GO:0046982
Trre1g04084 180 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 36 136 - -
Trre1g04084 180 MobiDBLite consensus disorder prediction 157 180 - -
Trre1g04084 180 SUPERFAMILY Histone-fold 37 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04084 Trre-Chr1 45956188 45956730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04084 37 179 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.336 1.44e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre1g04084 Histone 4.1e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04084 K08066 - gmx:100527803 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04084 1 45956188 45956730 Trre1g04084 1 45956188 45956730 ECH
Trre13g05106 13 56823464 56824451 Trre1g04084 1 45956188 45956730 ECH
Trre13g05106 13 56823464 56824451 Trre1g04084 1 45956188 45956730 PCT