Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04076 ATGGAAATTAATACAACTACCACTTCTGCAGGGCCACTAACTGTTTCTACAAAGAACCATACTTTCATACACCATTACCATCACTTACATTCAGAAAATCATAACCATAGTCATACTCATATTGACCATTTTCCTTTCAAAACCATTGTCATAATCATCACCATGGTTACCTTAATTATGCTCCTATTTACCATTTTTTTGGTTGTATGCTTGATCCGTCGCCAAAAATCTTCCAGCAAAAATGGGATTTGCAAAGATGATTGTGAGAGTAGAGTGCTTCATGACACAAGCAGGAGGCACATGGCTTCAACAATCATGTCCTTTGATTCTAGCCCAGATGTTAAAGGGGGGTGTCTTTATGGGGGAAATTTGAGCAAGACACCAACAACACCTAAATTTAGAGGAGTGCAAGTTTTCACATATAGGGAGCTAGAAGTTGCTACGAATGGATTCAATGAAGCAAATGTGATTAATAATGGAGGAGTTAATGGTTTGATATATAAGGGAGTCTTAAATGATGGAACTTTGGCAGCAATTAAGTTACTTCACAGTGAGGGTAAGCAAGGAGAGCGTGCCTTCAGAATAGAGGTTGATCTCCTAAGCCAATTGCGCTCTCCATATTTGGTGGAATTACTTGGCTATTGTGCTGATCAACACCACAGGTTATTGATTTTTGAATACATGCCTAATGGTACACTCCAACACCATCTACATTCCCCTAACGATCAAACACAACCATTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGGGCCTTGGAGTTCCTGCATGAACATTCTATCTCACCCGTGATCCACAGAGACTTCAAGAGCTATAATGTTCTACTGGATCAGAATTTCCGTGCAAAGGTGTCAGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAGAAATGGCCAAGTTTCTACCCGTGTGCTTGGGACCACTGGATATTTGGCACCAGAGTACGCCTCCACGGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTACGGTGTAGTTCTTCTCGAATTGCTGACAGGACGTGTACCAGTTGACATTAAGCGGCCCACAGGAGAACATGTCCTTGTGTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAAGTTGTGGAAATGGTTGACCCAGTTCTACACGGACAGTACTCAAAGAAAGCTTTAGTTCAGGTAGCTGCCATCGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCATTGATACCACTTGTGAGGACCCATTCTCTTTCCAGTTCCCTAAGATTTCAGAAACAAATACCAAGTTAA 1341 0.4236 MEINTTTTSAGPLTVSTKNHTFIHHYHHLHSENHNHSHTHIDHFPFKTIVIIITMVTLIMLLFTIFLVVCLIRRQKSSSKNGICKDDCESRVLHDTSRRHMASTIMSFDSSPDVKGGCLYGGNLSKTPTTPKFRGVQVFTYRELEVATNGFNEANVINNGGVNGLIYKGVLNDGTLAAIKLLHSEGKQGERAFRIEVDLLSQLRSPYLVELLGYCADQHHRLLIFEYMPNGTLQHHLHSPNDQTQPLDWWARMRIALDCARALEFLHEHSISPVIHRDFKSYNVLLDQNFRAKVSDFGLAKMGSEKRNGQVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPTGEHVLVSWALPRLTNREKVVEMVDPVLHGQYSKKALVQVAAIAAMCIQPEADYRPLMTDVVQSLIPLVRTHSLSSSLRFQKQIPS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04076 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Trre1g04076 446 CDD STKc_IRAK 161 428 - -
Trre1g04076 446 Gene3D Transferase(Phosphotransferase) domain 1 228 441 - -
Trre1g04076 446 ProSiteProfiles Protein kinase domain profile. 151 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04076 446 FunFam Receptor-like serine/threonine-protein kinase ALE2 228 442 - -
Trre1g04076 446 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Trre1g04076 446 Pfam Protein tyrosine and serine/threonine kinase 161 425 IPR001245 GO:0004672|GO:0006468
Trre1g04076 446 PANTHER OS07G0668900 PROTEIN 131 432 - -
Trre1g04076 446 Gene3D Phosphorylase Kinase; domain 1 124 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04076 Trre-Chr1 45849339 45852329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04076 49 438 Receptor kinase-like Gene Family AT3G58690 56.345 1.02e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre1g04076 PK_Tyr_Ser-Thr 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04076 - - gmx:100809810 646.736