Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04071 ATGACAGAACTACCCCTCTCTGTTTTCTCTTCATCTTCATCCTTTTCTCTCCGTTCGCCGGAGCACAGTCCGTTAACGACAACACAAACGACAACTATTACAACCGTTATCCGAAACATGGCAGGTATTGCCGGACGTTCACGACGCGCGGCGCGTGGTCTCGACGCTTCGATACTCGAGACGTTTCCGATCTTTGAATACTCGGTGGTGAAGATTCATAAAATTGGAAAAGGCGCGTTGGAATGTGCTGTTTGTTTGAACGAGTTTGAAGAGACTGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTGTTTCATCCTGAGTGTATTGATGAGTGGCTTGGTTCTCATACTACTTGCCCGGTTTGCAGAGCTAATTTGGTTCCGCAACCGGGTGAATCGGTTCACGGAATTCCGGTTTTTAATACTGAACCGGAAGATCTAGAGGCGCAAAACGTCGTTGTTGAATCAATTCCACAACATCAAAATGAAGAGGGTGCTGTTAAAGAGTCAACTGAGCCACAAGTGTTGAGTTTAAGCAACACGTTGAACCGAAACCGAACAAGAGGTTCGCAATCTGGTCGGCCTCGTTGGTTTTCGCGGTCTCACTCGACCGGTCATTCGGTGGTTCAACCGGGTGAGAATACTGAACGGTTTACTTTGAGGTTGCCGGTGGAAGTGAGGAAACAAATATTACAAAACCCGGAATTGCATCGGGCAAGAAGCTTGGTTGTGTTGCCAAGAGAAACTAGTTCACGACGTGGTTATCGAACCGGTGGCGGGGAAGGAAGTAGTAGAGGGAAGTCTGTAAGGAGGTTGGACCGCGGTTTGCTATCAGACCGGTGGGTTTTCACCATGGCACCTCCTTTTCTTGTAAGAGCGTCGTCGATTAGGTCACCAAGGGTAGGCAATAGCGCCGGAGAAGGTACCTCTGGTTTAACAGCGACAACAGCGGTTGTTGACTCACCGCGCCCTCCCGTTTAA 984 0.4888 MTELPLSVFSSSSSFSLRSPEHSPLTTTQTTTITTVIRNMAGIAGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPVFNTEPEDLEAQNVVVESIPQHQNEEGAVKESTEPQVLSLSNTLNRNRTRGSQSGRPRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSGLTATTAVVDSPRPPV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04071 327 MobiDBLite consensus disorder prediction 300 327 - -
Trre1g04071 327 MobiDBLite consensus disorder prediction 162 213 - -
Trre1g04071 327 FunFam E3 ubiquitin-protein ligase ATL6 43 130 - -
Trre1g04071 327 MobiDBLite consensus disorder prediction 173 213 - -
Trre1g04071 327 MobiDBLite consensus disorder prediction 250 269 - -
Trre1g04071 327 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g04071 327 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Trre1g04071 327 CDD RING-H2_EL5-like 81 124 - -
Trre1g04071 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 129 IPR013083 -
Trre1g04071 327 SUPERFAMILY RING/U-box 77 131 - -
Trre1g04071 327 MobiDBLite consensus disorder prediction 300 318 - -
Trre1g04071 327 SMART ring_2 82 123 IPR001841 -
Trre1g04071 327 Pfam Ring finger domain 81 124 IPR001841 -
Trre1g04071 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 45 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04071 Trre-Chr1 45783878 45784968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04071 50 311 Rapid Response to Elicitors AT3G05200 48.649 5.46e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04071 K10664 - gmx:100810865 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04071 1 45783878 45784968 Trre1g04071 1 45783878 45784968 ECH
Trre13g05116 13 56872643 56873776 Trre1g04071 1 45783878 45784968 PCT