Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04065 ATGTTGATGGTGGAACTGGAAACACAGGTTGTTTCGGGTTTAGCAGGAAGCAATAATAACTTGAGTTTTGTTGGGGGGAACATGTTTAAGTCTATCCCTCAAGCTGATGCTGTTTTGCTCAAGTGGGTGTTACACAATTGGAGTGATCATGATTGCATAAAGATACTAAAAAATTGCAAGAATGCTATATCAGGAAAAGGGAAAGTGATAATCATAGATGTAGTAATAAATGAAAAACAAGATGAGCATGAAATGACAGAAGTAAAACTTTTACTTGATGTTATTATGATGACCAGTCTCAATGGAAAAGAGAGAAATGAAAAGGAATGGAAACAACTTTTCTTACAAGCTGGCTTCAAATCTTACAAGATATTCCCCGCATTTGGTTTTAGATCTCTAATTGAGCTTTATCCTTAA 417 0.3501 MLMVELETQVVSGLAGSNNNLSFVGGNMFKSIPQADAVLLKWVLHNWSDHDCIKILKNCKNAISGKGKVIIIDVVINEKQDEHEMTEVKLLLDVIMMTSLNGKERNEKEWKQLFLQAGFKSYKIFPAFGFRSLIELYP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04065 138 Gene3D Vaccinia Virus protein VP39 3 138 IPR029063 -
Trre1g04065 138 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 14 136 IPR029063 -
Trre1g04065 138 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 138 IPR016461 GO:0008168
Trre1g04065 138 PANTHER O-METHYLTRANSFERASE 15 123 IPR016461 GO:0008168
Trre1g04065 138 Pfam O-methyltransferase domain 15 120 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04065 Trre-Chr1 45751159 45752392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04065 19 138 Monolignol Biosynthesis Gene Families AT1G51990 39.837 3.96e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04065 - K22588 gmx:100819853 184.496