Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04059 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTAAAAGATATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGACCCTTTTGGTTTTGGAATCAACAAAGATTTTTACAACTTCAACTTCAACAACCTTGTTGCAAAAGAACATGAACATGAACAAGAACAAGAACAAAGATCTTTCTGTTTTGTAGAAAACCAAACAGAGAACAATTATCCTTATTATGGAGATTGGAATAACAATACTTTTTCACCACCCCATTTCAATGAACTTCAAGAAACTACTACTACTGATCCAAGTAGTAACAACACTCAAAACTTCGATACCTCGCCTTCCATCAACACTTTTGTTCGTCCGAAAAGGCGCAGAGCAAGAAGCCGAAAAAACAAAGAAGAAATTGAGAGTCAGAGAATGACTCACATTACTGTTGAACGCAATAGGAGAAAGCAAATGAATGAGTATCTTGCTGTTCTTCGTTCTCTAATGCCAGAATCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAATTTTGTTAAAGAACTTGAACACAAGTTTCATTTGCTTGGTGCTAAGAAAGAAGAAGAGGTGAAATCTGAGGATGTTGGTGGATCAAACAAACCATTTTCTGAGTTCTTTACATTTCCACAGTATTCAACAAGTAGTAGTAGTAGTTCTAATTCTGCAGCAACCATTGGTGAAAAAGTTGGTGAGATTCAGTCTTGCATAGCTGACATAGAAGTGACAATGGTTGAAAGCCATGCAAATATCAAAATAAGATCAAAAAAGAGACCAAAACAGCTCTTGAAAATTGTATCTAGTCTCCATAACATGCATCTCACAATCTTGCATCTAAATGTTACCACTACTGGTGAAATTGTTCTCTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTATATCAAATGGTGAATAGGATTCAACAAGAACAGTGTTGA 1002 0.3653 MCLPEEERDRVKDMALEAVVYPQTQDPFGFGINKDFYNFNFNNLVAKEHEHEQEQEQRSFCFVENQTENNYPYYGDWNNNTFSPPHFNELQETTTTDPSSNNTQNFDTSPSINTFVRPKRRRARSRKNKEEIESQRMTHITVERNRRKQMNEYLAVLRSLMPESYIQRGDQASIIGGAINFVKELEHKFHLLGAKKEEEVKSEDVGGSNKPFSEFFTFPQYSTSSSSSSNSAATIGEKVGEIQSCIADIEVTMVESHANIKIRSKKRPKQLLKIVSSLHNMHLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAAAVYQMVNRIQQEQC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04059 333 SMART finulus 140 191 IPR011598 GO:0046983
Trre1g04059 333 MobiDBLite consensus disorder prediction 83 115 - -
Trre1g04059 333 PANTHER MAX DIMERIZATION, MAD 67 331 - -
Trre1g04059 333 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
Trre1g04059 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
Trre1g04059 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 198 IPR036638 GO:0046983
Trre1g04059 333 Gene3D - 124 206 IPR036638 GO:0046983
Trre1g04059 333 MobiDBLite consensus disorder prediction 83 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04059 Trre-Chr1 45494132 45495816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04059 14 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.562 1.20e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g04059 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04059 - - pvu:PHAVU_007G181900g 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04059 1 45494132 45495816 Trre1g04059 1 45494132 45495816 ECH
Trre13g05118 13 56894164 56895594 Trre1g04059 1 45494132 45495816 PCT