Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04057 ATGTTACTCTCATCACTTGATTCTTCAACTTCATATCTGAGCACAACCACGGTAGTTGCACTTTGTGTATTCTTCGCACTCCTCTGCGCTTGCATCATCGTTGGCCACCTTCTTGAAGAGAATCGATGGGCCAATGAATCCATCACTTCTCTCCTTCTTGGTTTGTGTTCTGGAGTAGTGGTGTTGCTGGTGACCAAATTCAATAGTACCGAGATTCTAATATTCAACGAAGATTTGTTCTTTCTTTACTTGCTTCCACCAATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAGGAATTTCACTACTATACTTCTGTTTGGAGTCCTTGGAACAGTTATTTCTTTCTGCCTTATATCTCTTGGTGCCTTTCTGCTCTTTAATATGATTGGAATAACTAACCTCGACATAAAAGATCATCTAGCCATTGGGGCCATATTATCAGCAACTGACTCAGTTTGTACATTACAGGTTCTGAGTCAAGATGAAACACCATTTCTTTACAGCATTGTATTTGGCGAAGGAGTAGTAAATGATGCTACATCTATTGTTCTTTTCAATTCAGTTCAATCACTTGACATCAGCAGCATCAATGTTATTACAGTTTTGAAATTGTTGGGGACATTCCTTTACCTCTTTTGCACTAGTACTGCCCTTGGCATAGCAGTTGGCCTTTTAAGTGCTTATATTATTAAGACACTTTACTTTGGAAGGCACTCTACCGATCGCGAAGTTGCACTTATGATGTTAATGGCATATTTATCATATATGATCGCCGAGCTTCTAAATCTCAGTGGAATTTTGACAATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAACGTTACCGAAAGCTCAAGGACAACAACAAAGCACTCATTTGCAACTATATCATTCATAGCTGAAACCTTTATATTTCTATATGTTGGCATGGATGCTTTCGACATTGACAAATGGAAAAGGAGCAAAGCCAGCATTGGAACTTCAGTTGCTGTCAGCTCAACTTTGATTGCATTAGTTTTGATTGGAAGAGCAGCTTTTGTTTTCCCTATGGCAAACATTGCAAATTGCACCAAAACAAGAGAGAGCACCAAAATTGAGTTTCGTTCGCAGTTTATAATTTGGTGGGCAGGCCTGATGAGAGGTGCAGTAACCATTGCCTTGTCTTATAACCAGTTTTCAAAATCTAAGATATCATCGGCTGAAGACTCTTTGATGATCACTTCAACTATAATCCTTGTCTTATTCAGTACTGTGGTATTTGGTTCTATAACGAAGCCTTTGATTAAGGCTGTGAATTTAAGGCATTCAAAACTATCCATTTATGACTCCACTGATATTCAAGAGGATCTGAGATTACTATTTCTTGAAAGCAATTGTTCCAACAACCAAAGCAATAATCAGACATATCGCAGACAAAGTAGCCTGAGTTTGATGATACGTAATCCTACTACTACGGTTCACTACTTTTGGAGGAAATTCGATGATAAGTTTATGAGACCTATATTTGGTGGTAGAGGTTTTGTTCCAGTTGTTCATGGTTCACCGCCCGCTGAAGAGGATATTTCTTGA 1593 0.3867 MLLSSLDSSTSYLSTTTVVALCVFFALLCACIIVGHLLEENRWANESITSLLLGLCSGVVVLLVTKFNSTEILIFNEDLFFLYLLPPIIFNAGFQVKKKQFFRNFTTILLFGVLGTVISFCLISLGAFLLFNMIGITNLDIKDHLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLDISSINVITVLKLLGTFLYLFCTSTALGIAVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTESSRTTTKHSFATISFIAETFIFLYVGMDAFDIDKWKRSKASIGTSVAVSSTLIALVLIGRAAFVFPMANIANCTKTRESTKIEFRSQFIIWWAGLMRGAVTIALSYNQFSKSKISSAEDSLMITSTIILVLFSTVVFGSITKPLIKAVNLRHSKLSIYDSTDIQEDLRLLFLESNCSNNQSNNQTYRRQSSLSLMIRNPTTTVHYFWRKFDDKFMRPIFGGRGFVPVVHGSPPAEEDIS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04057 530 PANTHER SODIUM/HYDROGEN EXCHANGER 15 510 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre1g04057 530 Pfam Sodium/hydrogen exchanger family 23 437 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre1g04057 530 Gene3D - 140 192 - -
Trre1g04057 530 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04057 530 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04057 530 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04057 530 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04057 530 NCBIfam sodium/hydrogen exchanger 3 19 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04057 Trre-Chr1 45417260 45420657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04057 2 523 Antiporters AT3G05030 60.674 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04057 K14724 - qsu:112009828 788.489