Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04033 ATGGCAAATGTGGGTGATGATCCCCTGCCAGAGAATTGTTTATGGAATCATTTTAGAAGTTTTGATAGTAAATCGATGAACAGTACTATGGGTGAAGGTTTTAATAATAAACCTAGGACTCTAGGATCTCTCTTGGCTAGTTCTTCTTCTGCTCAAGACTTGAGAAATATGGACCTTGAGAAAGAGAGAGATGACGAGGCGTCTCCAAGAGGAGTCTTAGAGGCATGTGTTAGAGGTTTTGATGCTCAGCAATCACCTGAACCAGAAACCAGTTGTTCGAATTCGAGGGCACGGTCACATTGGGGCAGATTTTTCAAACTGTGGAAGAGAAAATCGGTGAAACGCCTAGCTTCTATCCCTCCTATTGGTGTGCCAAGGATGCCAAAGTGGAAAAGCAAAAGCACTAGGGAAAATTGTGTTATGAGTAGTAATCTACAAAATTTTAGGTCTTCTTTGGTGACTTTTAGCCTCTCTGACCTGAGAAATGCAACTGACAATTTCAACCAAGAAAATATTATTGGAAGAGGTGGTTTTTCTGAAGTTTACAAGGGTTCTCTCCAAGATGGACAACTTATAGCTATAAAGAAAATGACTACAGGAAGCACAGATGAGAAAACAGCCGGATTTCTATCTGAGCTAGGAATTATTGCTCATGTTGATCATCCTAATACTGCCAAGCTTGTTGGATGTTGTGTAGAGGGAGAAATGCATCTTGTCTTTGAACTCTCTACATTGGGAAGTTTAGGATCTGTTCTTCATGGTTCAGATAAAACCAAAATGGATTGGAGTAAAAGGTATAAAGTTGCTCTTGGAATAGCTGATGGTCTTCTCTATCTTCACGACAATTGTGAAAGGCGGATAATTCATAGAGATATAAAGGCAGAGAATATTCTGCTCACAGAGAATTTTGATCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAACTGAGTCACCATAATGTGTCCACATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTGGATGAGAAAACTGATGTTTATTCTTTTGGTGTTCTACTTTTGGAAATCATAACCGGGCGCAAGGCTATAGATCATAATCAGAAGAGCATTGTAACATGGGCAAAACCTTTACTTGATGCTAATAATATCAAGGACGTTGTCGATCCATCTCTTGGAGATACCTATGACAAAGGACAAATGGGATGTCTTGGTTTGACTGCAGCAATGTGTGTTGAGCAGTCTCCTATCTTACGCCCTCGAATGAGTCAGGTTGTAACATTGCTAAGAGGGCAAGACGCTGTCCTAGCCGCAAAAGCATGCAGCAGGAGGCCTCTCCGAAGAACATATTCGGAAGAGTTACTTGATGCACAAGAATACAACTCCACAAAATATCTACGAGAACTCAATCGACACAAGCAAGTTGCCTTGGGTCTTGACTGCATGTAA 1461 0.4086 MANVGDDPLPENCLWNHFRSFDSKSMNSTMGEGFNNKPRTLGSLLASSSSAQDLRNMDLEKERDDEASPRGVLEACVRGFDAQQSPEPETSCSNSRARSHWGRFFKLWKRKSVKRLASIPPIGVPRMPKWKSKSTRENCVMSSNLQNFRSSLVTFSLSDLRNATDNFNQENIIGRGGFSEVYKGSLQDGQLIAIKKMTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSVLHGSDKTKMDWSKRYKVALGIADGLLYLHDNCERRIIHRDIKAENILLTENFDPQICDFGLAKWLPEQLSHHNVSTFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRKAIDHNQKSIVTWAKPLLDANNIKDVVDPSLGDTYDKGQMGCLGLTAAMCVEQSPILRPRMSQVVTLLRGQDAVLAAKACSRRPLRRTYSEELLDAQEYNSTKYLRELNRHKQVALGLDCM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04033 486 SMART serkin_6 167 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04033 486 Pfam Protein tyrosine and serine/threonine kinase 169 372 IPR001245 GO:0004672|GO:0006468
Trre1g04033 486 PANTHER OS08G0249100 PROTEIN 52 476 IPR046958 -
Trre1g04033 486 Gene3D Phosphorylase Kinase; domain 1 128 241 - -
Trre1g04033 486 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 244 447 - -
Trre1g04033 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Trre1g04033 486 Gene3D Transferase(Phosphotransferase) domain 1 244 450 - -
Trre1g04033 486 SUPERFAMILY Protein kinase-like (PK-like) 148 438 IPR011009 -
Trre1g04033 486 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 143 242 - -
Trre1g04033 486 ProSiteProfiles Protein kinase domain profile. 167 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04033 486 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04033 Trre-Chr1 45278224 45281513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04033 130 478 Receptor kinase-like Gene Family AT1G53420 39.888 4.49e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre1g04033 PK_Tyr_Ser-Thr 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04033 - - cam:101512181 794.267