Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04024 ATGGAGTGCAACAAGGATGAGGCTGTGAGGGCTAAGCAATTGGCAGAAAGTAGAATGCAAAGGGGTCAATTTGTAGAGGCACTGAAGTTTGCTAACAAGGCCAAAAAGCTGTATACTGATGTTGATAATATTTCTCAGATCCTTGCAATTTGTGAGGTTCACATTGCTGCATTGAACAAACTCTCTAGTTCTGAAATGGACTGGTATCGAATTCTTCAGACAGAACGACTCTCTGAGGAAGCAATCATAAAGAAACAGTACAGAAAGCTTGCATTGCTACTTCATCCTGATAAAAATAAATTTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGTGTTGAGTGACCAAGCTAAGCGGTCTTTACATGACATGAAGGTTAAAGCCCATGTGAGAGCTGCAGTACCTAAGAAGACCCCATCCCATCACTCAAATGGGAACATGTCTGCAGCAAATCAAGTTCCAAATGCAACAAAATATCCGAAGAAAAGTTCTTCAAAATTCCCTTCTTCGAATCCCCATCTCAATGCACAACAGACATTCTGGACAATTTGCAATCATTGTAATACCAAGTTCCAGTACTACTTTAATATTATGAATATGACCTTATTATGTCAACATTGTAAGAAACCCTTTGTAGCTCTTGGTATTAGTCAACAGGCTGCCCCATCATTTGTACCATTTGCTTCCCCAAAAGTGGCTCCAATGCAGGCTCCGCCAAAACCAGCCTCTAAAAGTAATGGTGGAAAACCCCCTGGTGGTGGATATGCAGAAACTTTTATGAGGCCGCCATATCCTTCATGTATGAAAACATGTGCCACTGGAGTTGGTAAGCAGCATAAAGATGAAAAGAGTAAGGATGGCTATGTTCCTGTATCCAAACCAATGGAGTCACAAGCCTCAAAAAATGTTGGAAGCAAGAGAGTGAGACAACCAGAACCAAGTTCCAAACAGAGATTCAACACTCAAAATGATGATGAAAATAAAGATGTCAATGTTCAAGAAAATCATGTTGATCCTTCAAGGTTGAATGTTAGAAGGTCTTCCAGACAAAAGCAACATGTTTCATATGTGGAAACGTATGCAGATGACAATTTTGATGTTCCTTCCAAAAAGCCACGACAAAATGAATCATTTAACAATGATGAAGTCGAGGAAAAGAATGTGTCTGAAGAAACAGTTTTAAGTAATACAAGCGGAGATAAGCATTCTGATGTTCAAGAAGATAAGGTATTTGAGTCAGACATCGATTCTAAAAGGTTAAATGAGGAAAACTGCTCTCCACCGAAGTCAAATATCCCTTCCAGTCCAGAGATCATTACTTGTCCTGATCCAGATTTCAATAATTTTGAGAAGGACAAAGCAGATGAAAGTTTTGCTGCTAATCAATTATGGGCAATTTATGATACCACTGATGCTATGCCAAGGTTTTATGCTCTTATCAAGAAAGTGACATTCCCTTTCAAGTTGCATATCACATGGTTGGAAGCTGACCCAGATGAGGATGATGAGGTTGCTTGGTATAATGCAGATTTGCCTATTGCTTGTGGTAAATTCAAACTTGCTAACTCTCAGAAAACCACAGATAAAGGTATGTTCTCTCATCAGATTCAGTTTATAAAAGGAAATGAGAAAAATTGTTACCTAGTGTTTCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATGTCAAATGGAGTTATAATCCAGAAAATTATTTGAAGCGTGAATTTGCTTATGTGGAAATCCTATCAGATTTTACTGAAAATGTTGGCATTGAAGTAGCTTACCTAGGCAAAGTGAAAGGGTTTGTTAGCCTCTTTGAGAAAACTGGGAAGAATGGAGAGAATACATTTTGTATTCTACCCAATGAGCTATACAAATTCTCACATCAAATTCCTTCATATAAGATGAGTGGTGATGAAAGGGAAGGTGTTCCAAGAGGTTGCTTTGAACTCGATCCTGCTGCCCTGCCAGATGTATTTGAAGCTGAGAAAGATTCAAGGGAAAAGATATGA 2037 0.3898 MECNKDEAVRAKQLAESRMQRGQFVEALKFANKAKKLYTDVDNISQILAICEVHIAALNKLSSSEMDWYRILQTERLSEEAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRVLSDQAKRSLHDMKVKAHVRAAVPKKTPSHHSNGNMSAANQVPNATKYPKKSSSKFPSSNPHLNAQQTFWTICNHCNTKFQYYFNIMNMTLLCQHCKKPFVALGISQQAAPSFVPFASPKVAPMQAPPKPASKSNGGKPPGGGYAETFMRPPYPSCMKTCATGVGKQHKDEKSKDGYVPVSKPMESQASKNVGSKRVRQPEPSSKQRFNTQNDDENKDVNVQENHVDPSRLNVRRSSRQKQHVSYVETYADDNFDVPSKKPRQNESFNNDEVEEKNVSEETVLSNTSGDKHSDVQEDKVFESDIDSKRLNEENCSPPKSNIPSSPEIITCPDPDFNNFEKDKADESFAANQLWAIYDTTDAMPRFYALIKKVTFPFKLHITWLEADPDEDDEVAWYNADLPIACGKFKLANSQKTTDKGMFSHQIQFIKGNEKNCYLVFPKKGETWAIFRNWDVKWSYNPENYLKREFAYVEILSDFTENVGIEVAYLGKVKGFVSLFEKTGKNGENTFCILPNELYKFSHQIPSYKMSGDEREGVPRGCFELDPAALPDVFEAEKDSREKI 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04024 678 MobiDBLite consensus disorder prediction 238 264 - -
Trre1g04024 678 MobiDBLite consensus disorder prediction 369 394 - -
Trre1g04024 678 MobiDBLite consensus disorder prediction 144 176 - -
Trre1g04024 678 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 669 - -
Trre1g04024 678 MobiDBLite consensus disorder prediction 280 443 - -
Trre1g04024 678 Pfam DnaJ domain 67 128 IPR001623 -
Trre1g04024 678 SUPERFAMILY Chaperone J-domain 57 133 IPR036869 -
Trre1g04024 678 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Trre1g04024 678 MobiDBLite consensus disorder prediction 324 350 - -
Trre1g04024 678 SMART dnaj_3 66 123 IPR001623 -
Trre1g04024 678 MobiDBLite consensus disorder prediction 139 176 - -
Trre1g04024 678 Gene3D DnaJ domain 55 151 IPR036869 -
Trre1g04024 678 Pfam Domain of unknown function (DUF3444) 441 648 IPR024593 -
Trre1g04024 678 CDD DnaJ 67 120 IPR001623 -
Trre1g04024 678 MobiDBLite consensus disorder prediction 300 323 - -
Trre1g04024 678 MobiDBLite consensus disorder prediction 406 428 - -
Trre1g04024 678 MobiDBLite consensus disorder prediction 280 294 - -
Trre1g04024 678 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trre1g04024 678 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trre1g04024 678 PRINTS DnaJ domain signature 69 87 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04024 Trre-Chr1 45045500 45047536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04024 4 231 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.915 8.93e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04024 - - tpra:123896967 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04024 1 45045500 45047536 Trre1g04024 1 45045500 45047536 ECH
Trre13g05151 13 57116711 57119827 Trre1g04024 1 45045500 45047536 PCT