Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04023 ATGGAGTGCAACAAGGATGAGGCTGTGAGGGCTAAGCAATTGGCAGAGAGTAGAATGCAAAGGGGTCAATTTGTAGAGGCACTGAAGTTTGCTAACAAGGCCAAAAAGCTGTATGCTGATGTTGATAATATTGCTCAGATCCTTACAATTTGTGAGGTTCACATTGCTGCATTGAACAAACTCTCTTGTTCTGAAATGGACTGGTATCGAATTCTTCAGACAGAAAGACTCTCCGAGGAAGCAATCATAAAGAAACAGTACAGAAAGCTTGCATTGCTACTTCATCCTGATAAAAATAAATTTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGTGTTGAGTGACCAAGCAACGCGGTCTTTACATGACATGAAGGTTAAAACTCATGTGAGAGCTGCAGTACCTAAGAAGACCCCATTCCATCACTCAAATGGGAACATGTCTGCAGCAAATCAAGTTCCAAATGCAACAAAATCTCAGAAAAAGCGTTCTTCAAATGGGAACATGTTTGAAGTGTTGACCCCTGAGGTGCGGGAAATTTTAGACAAATTGACACAGCAGCTGCAGTCTCAAAACAAGCTATTAGAAATGTTGAGGGAAAGAATGGACCGCTTGGGTGAGTTCAATTTTCGATCCTCTACTTCGCACTCTCAAGTGGAACACAAAGTGCTGCTTGTGGAACTTGAATATCCTCAAGTACTAGGAGGTGTTATTGTTGTGTGA 738 0.4214 MECNKDEAVRAKQLAESRMQRGQFVEALKFANKAKKLYADVDNIAQILTICEVHIAALNKLSCSEMDWYRILQTERLSEEAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRVLSDQATRSLHDMKVKTHVRAAVPKKTPFHHSNGNMSAANQVPNATKSQKKRSSNGNMFEVLTPEVREILDKLTQQLQSQNKLLEMLRERMDRLGEFNFRSSTSHSQVEHKVLLVELEYPQVLGGVIVV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04023 245 CDD DnaJ 67 120 IPR001623 -
Trre1g04023 245 Gene3D DnaJ domain 64 228 IPR036869 -
Trre1g04023 245 Pfam DnaJ domain 67 128 IPR001623 -
Trre1g04023 245 SUPERFAMILY Chaperone J-domain 56 132 IPR036869 -
Trre1g04023 245 SMART dnaj_3 66 123 IPR001623 -
Trre1g04023 245 Coils Coil 186 206 - -
Trre1g04023 245 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trre1g04023 245 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trre1g04023 245 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trre1g04023 245 MobiDBLite consensus disorder prediction 142 174 - -
Trre1g04023 245 PANTHER BNAC03G44070D PROTEIN 1 167 - -
Trre1g04023 245 MobiDBLite consensus disorder prediction 146 174 - -
Trre1g04023 245 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04023 Trre-Chr1 45040267 45045454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04023 4 128 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.405 4.45e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04023 - - tpra:123884658 292.352