Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04018 ATGGCTGTTGAAATTGCATCTGTTGTCTCTAAGTTACAAATGCTATCCACGTCCGATCATGCCTCCGTTGTTTCCATGAACTTGTTTGTGGCACTTTTATGTGCTTGTATTGTCCTTGGTCATCTTCTCGAGGAGAATCGTTGGATGAATGAATCCATCACTGCCCTTTTGATTGGTATTGCCACTGGTGTAGTCATTTTGCTGTTAAGTGGCGGAAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCGCCTATAATATTCAATGCCGGGTTTCAGGTGAAAAAGAAGCAATTTTTCGTCAACTTCATGACTATCACGTCGTTTGGTGCTATTGGCACATTAATATCATGTGTCGTCATAACTTTCGGTGCTACTCAAGCTTTTAAGATGATGGATATCGGGCCACTGGATATCGGCGATTACCTAGCTATTGGAGCAATATTTGCCGCGACAGATTCTGTTTGCACGTTGCAGGTGCTAAATCAGGATGAGACACCTTTGTTATACAGTCTTGTATTTGGGGAAGGTGTTGTGAATGATGCTACCTCAGTGGTGCTTTTCAATGCAATTCAAAGCTTTGATCTCGACCGACTTAATCCTTCAATTGCAGTCCACTTTTTGGGCAACTTCTTATATTTGTTTATAGCAAGCACGCTCCTTGGTGTTTTGACAGGTCTGCTTAGTGCTTACGTTATCAAAAAGCTGTACATTGGCAGGCACTCAACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGTTATTCTATCTGAGTGGAATTCTCACGGTATTCTTTTGTGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACCGAGAGTTCAAGAGTCACTACCAAGCATTCTTTTGCTACCTTGTCATTTGTTGCTGAGATATTTATCTTCCTTTATGTCGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGCGATAGTCCTGGAACATCTATAGCAACAAGTGCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTCCCCCTATCCTTTTTATCCAACTTGACTAAGAAACAACAACATCAGAAGATATCCTTCAGACAGCAAGTGATCATTTGGTGGGCTGGTCTTATGAGAGGCGCTGTTTCAATGGCCCTCGCGTATAATCAGTTCACTAGGTCGGGGCACACTCAACTGCGTAGCAATGCAATCATGATCACCAGCACCATCACTGTTGTCCTTTTCAGCACAGTGGTGTTTGGTTTGCTGACAAAGCCACTTATAAGGCTTCTACTACCTCATCAGAAAGCCACAAACAGCATGACAACCACAGAATCATCTACACCAAAATCGGTCATTGTACCACTTCTAGGAGAGCCCCGAGATTCTGAAGCTGATCTTGAAGGCCATGAAATACACCGTCCAAACAGCATCCGTGCCTTACTTTCCACTCCAACTCACACTGTTCATCGACTATGGAGAAAGTTTGACGATTCATTCATGCGTCCTGTATTTGGTGGCAGGGGTTTTGTTCCTGTAGAACCCGGCTCACCAACTGAACGCAATGGTAATGTATGGCGTTGA 1626 0.4274 MAVEIASVVSKLQMLSTSDHASVVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGIATGVVILLLSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITSFGAIGTLISCVVITFGATQAFKMMDIGPLDIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLDRLNPSIAVHFLGNFLYLFIASTLLGVLTGLLSAYVIKKLYIGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIATSAVLLGLILLGRAAFVFPLSFLSNLTKKQQHQKISFRQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHQKATNSMTTTESSTPKSVIVPLLGEPRDSEADLEGHEIHRPNSIRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPTERNGNVWR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04018 541 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04018 541 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04018 541 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04018 541 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre1g04018 541 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre1g04018 541 PANTHER SODIUM/HYDROGEN EXCHANGER 16 519 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre1g04018 541 Gene3D - 146 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04018 Trre-Chr1 45007964 45012826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04018 6 538 Antiporters AT3G05030 78.957 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04018 - - gmx:732573 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04018 1 45007964 45012826 Trre1g04018 1 45007964 45012826 ECH
Trre13g05160 13 57145876 57150790 Trre1g04018 1 45007964 45012826 PCT