LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04017	ATGGGTTGTGTAATTAGCCGAGAAGCGGAATCGGGTATTGTGTCGGAGGTGAAGGAGGAGAGGAATTCGAGAGTTGAGTCAAGTAAGAAGGTTGAAGAAGTGTCGACGAGTAGAGTTGAGGAGAGTGTGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGAAGGTTAAGGAGAAGGAAGAGAAGAGTGATGGTGATGGAGTTCAGCGGCCGAAGGGTGAAAGGAGAAGATCAAAGCCAAACCCGAGGTTAAGTAATCCGTCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAGCGGTTTGTGGGGAAGCCCTTAATGGGTGGACTCCGCGAAAGGCTGATACATTCGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGATTTATTAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGGTTTGACAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGGTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCGAGCCCTGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTTCTATCAGGACTTGAGCATTGTCATACTCGGCATGTACTTCACCGCGATATTAAAGGATCAAATCTTTTGATTGACAACGAAGGAGTTCTCAAAATTGCCGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACTGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGCTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCTAATGCGACCTTGTTCAAACCTCGAGAGCCATATAAAAGAAGCATAAGAGATGTATTTAAAGAATTTCCACCTTCCGCTTTGCCCCTTGTTGATACTCTTCTTGCAATTGATCCAGTAGAACGGAAGAGTGCTTCAGATGCTCTAAGAAGTGAGTTCTTTAATACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCGAAGTATCCCCCAACCAAGGAAATGGATGTTAAACGGCGAGATGATGAAGCAAGAAGATCAAGAGCTGCAGCCAAAGCTCGCGTTGATGGGGGAAAGAAGCATCGGACACGTGATCGTGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATCGATAGAAGGCGTCTAATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGACGGACAACTTGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCCCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATAGGTAATAATCCTACTAGCAATGGTTTCACAAAGAAGAAGAAAAACACTGCAAATGATGCATTGGATTTATCAAAACCATATAAAGGAAACCACAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA	1758	0.4317	MGCVISREAESGIVSEVKEERNSRVESSKKVEEVSTSRVEESVVEVQNGEKVKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPSKHLQGEQVAAGWPSWLTAVCGEALNGWTPRKADTFEKIDKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHTRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRSIRDVFKEFPPSALPLVDTLLAIDPVERKSASDALRSEFFNTEPYACDPSSLPKYPPTKEMDVKRRDDEARRSRAAAKARVDGGKKHRTRDRAVKAAPAPEANAELQYNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVPLDSMSYTFSKEPFQAWSGPIGNNPTSNGFTKKKKNTANDALDLSKPYKGNHKDKGKGKKIIA	585

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g04017	585	MobiDBLite	consensus disorder prediction	416	466	-	-
Trre1g04017	585	Gene3D	Transferase(Phosphotransferase) domain 1	205	446	-	-
Trre1g04017	585	MobiDBLite	consensus disorder prediction	558	573	-	-
Trre1g04017	585	CDD	STKc_CDK9_like	122	406	-	-
Trre1g04017	585	FunFam	probable serine/threonine-protein kinase At1g54610	205	446	-	-
Trre1g04017	585	ProSiteProfiles	Protein kinase domain profile.	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre1g04017	585	MobiDBLite	consensus disorder prediction	424	461	-	-
Trre1g04017	585	ProSitePatterns	Protein kinases ATP-binding region signature.	128	151	IPR017441	GO:0005524
Trre1g04017	585	Pfam	Protein kinase domain	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre1g04017	585	PANTHER	CELL DIVISION PROTEIN KINASE	120	410	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04017	Trre-Chr1	44986962	44991926	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04017	114	444	Core Cell Cycle Gene Families	AT5G10270	52.738	1.29e-122	369

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre1g04017		Pkinase	5.8e-66	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g04017	K08819		-	gmx:100817289	943.725

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