Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04017 ATGGGTTGTGTAATTAGCCGAGAAGCGGAATCGGGTATTGTGTCGGAGGTGAAGGAGGAGAGGAATTCGAGAGTTGAGTCAAGTAAGAAGGTTGAAGAAGTGTCGACGAGTAGAGTTGAGGAGAGTGTGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGAAGGTTAAGGAGAAGGAAGAGAAGAGTGATGGTGATGGAGTTCAGCGGCCGAAGGGTGAAAGGAGAAGATCAAAGCCAAACCCGAGGTTAAGTAATCCGTCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAGCGGTTTGTGGGGAAGCCCTTAATGGGTGGACTCCGCGAAAGGCTGATACATTCGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGATTTATTAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGGTTTGACAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGGTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCGAGCCCTGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTTCTATCAGGACTTGAGCATTGTCATACTCGGCATGTACTTCACCGCGATATTAAAGGATCAAATCTTTTGATTGACAACGAAGGAGTTCTCAAAATTGCCGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACTGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGCTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCTAATGCGACCTTGTTCAAACCTCGAGAGCCATATAAAAGAAGCATAAGAGATGTATTTAAAGAATTTCCACCTTCCGCTTTGCCCCTTGTTGATACTCTTCTTGCAATTGATCCAGTAGAACGGAAGAGTGCTTCAGATGCTCTAAGAAGTGAGTTCTTTAATACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCGAAGTATCCCCCAACCAAGGAAATGGATGTTAAACGGCGAGATGATGAAGCAAGAAGATCAAGAGCTGCAGCCAAAGCTCGCGTTGATGGGGGAAAGAAGCATCGGACACGTGATCGTGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATCGATAGAAGGCGTCTAATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGACGGACAACTTGGATTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCCCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATAGGTAATAATCCTACTAGCAATGGTTTCACAAAGAAGAAGAAAAACACTGCAAATGATGCATTGGATTTATCAAAACCATATAAAGGAAACCACAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA 1758 0.4317 MGCVISREAESGIVSEVKEERNSRVESSKKVEEVSTSRVEESVVEVQNGEKVKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPSKHLQGEQVAAGWPSWLTAVCGEALNGWTPRKADTFEKIDKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHTRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRSIRDVFKEFPPSALPLVDTLLAIDPVERKSASDALRSEFFNTEPYACDPSSLPKYPPTKEMDVKRRDDEARRSRAAAKARVDGGKKHRTRDRAVKAAPAPEANAELQYNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVPLDSMSYTFSKEPFQAWSGPIGNNPTSNGFTKKKKNTANDALDLSKPYKGNHKDKGKGKKIIA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04017 585 MobiDBLite consensus disorder prediction 416 466 - -
Trre1g04017 585 Gene3D Transferase(Phosphotransferase) domain 1 205 446 - -
Trre1g04017 585 MobiDBLite consensus disorder prediction 558 573 - -
Trre1g04017 585 CDD STKc_CDK9_like 122 406 - -
Trre1g04017 585 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Trre1g04017 585 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04017 585 MobiDBLite consensus disorder prediction 424 461 - -
Trre1g04017 585 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Trre1g04017 585 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04017 585 PANTHER CELL DIVISION PROTEIN KINASE 120 410 - -
Trre1g04017 585 SUPERFAMILY Protein kinase-like (PK-like) 116 412 IPR011009 -
Trre1g04017 585 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04017 585 MobiDBLite consensus disorder prediction 1 92 - -
Trre1g04017 585 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Trre1g04017 585 MobiDBLite consensus disorder prediction 538 585 - -
Trre1g04017 585 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Trre1g04017 585 MobiDBLite consensus disorder prediction 538 557 - -
Trre1g04017 585 MobiDBLite consensus disorder prediction 12 80 - -
Trre1g04017 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04017 Trre-Chr1 44986962 44991926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04017 114 444 Core Cell Cycle Gene Families AT5G10270 52.738 1.29e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre1g04017 Pkinase 5.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04017 K08819 - gmx:100817289 943.725