Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04009 ATGTTGGTTTCTAATGGAGAAGAGAAGATTCTGTTATCTTCAGAAAATGAAACTGAGATTACAAAGTCAGATTCAGTTGATGGGTTGTTACCGGTTTCAACCGTTTATACCGATGTGGGAATCGTTCCTGAGCAACAAAAGAATGAGCTTGAACACTTCATATCCAATTTACAAAGAGAACTTGAGGAACCGAGGGTGAAGCAAAGAATAGTAGATGAAAAGAGAAGAGAAGCATTGAGTAAGATATTGGATATCAAAGGTAGTATTAGAGTGTTTTGTAGAATTCGACCGAATCATTTGACAGAGAAGAGAAGAAATTCTGAACCGGTATCAGCTGGATCAGAGAGAATTCGGGTTAAGTTGGGAGGAACAAGGAAGGATTTTGAGTTTGATAAGGTTTTTCCTCAAGAAACAGGCCAAGAAAGTGTTTTTGTTGAGGTGGAGCCAATTCTAAGATCTGCAATGGATGGACATAATGTGTGTGTTTTCGCTTACGGTCAAACAGGCACAGGCAAAACATTCACCATGGATGGTACAAATGAGCAGCCAGGGATTATTCCTCGTGCTCTCGAAGAGCTCTTTCGTCAAGCCTCGATGGATGGTTCATCTTCTTTTACTTTTTCAATGAGTATGTTGGAAGTTTACATGGGCAATGTTAGGGATCTGCTGGCTCCAAGACAGTCTTCTAGACCACATGAAAATATGACAAAATGTAATCTCAACATCCAAACAGATCCAAAGGGATTGGTGGAAATTGAGGGTCTCTCAGAAGTGCAGATTTCTGATTGTGCTAAAGCCAAATGGTGGTACAACAAGGGAAGACGATTCAGATCGACATCGTGGACTAATGTGAATGAGGCATCAAGCAGGTCACACTGCTTGACAAGGATAAGCATATTTAGACGCGGGGATACTTCTGAAGCCAAAAGCGAAACAAGTAAGTTGTGGATGGTTGATCTTGGAGGCAGTGAGCGGTTGCTGAAAACTGGGGCCAAAGGACTAACACTTGACGAAGGACGAGCTATTAATCTCTCTCTTTCAGCTCTAGCTGATGTCCTAGCAGCTTTGAAGAGAAAGAAGTGTCATGTTCCTTACAGAAATAGCAAGCTGACCCAACTACTGAGAGATTCTCTAGGTGATGGCTCAAAGGTCTTGATGCTCGTGCATATTAGCCCTTCCGAAGAAGATGTATGCGAGACAGTTTGTTCATTAAACTTTGCTAAGAGAGCGAGAGCAATAGAGTCTAATAGAGAAGTACCAATGGAATTGAAGAAGCAAAGGGAGAAAAAAATTATGGAGCTCGAGGAAGACATTAAGGAAGCTGAAAAGCAACGTCAAAGTTTAAGGGAACAAATACAGAATATCGAGTTAAAGTTATGCGAGAATAAAAAGCTCTTTTCAACCACATATAGTCTTCAGGAAAGTGATGACTTGGTAACTTCTGCTAGCCTAAAAGATGATTTCAAAGAGGTTATTGAAACACCTAAAACATCTAAGAAGAATATTCAAAGAAGTGTCACGAATTCAGTGCCTCGATTCATGAGTTCAACTGTTGCCAGTCGGCATAGGCAAATTGCGTCCGAACAAGAAATTGGTGGGAGAACAAAAAGTTTAAGATCAGTAGTCACCAGAAGTTCAATCCAGTTTCCATGTTCACAATCGTTAAGTTATTCAGATCTTCGCATCAAAACAATACTGCGAAGTTCAACTGGAAAATCTCGGTATGCTGAAACAAATAATGTTCCAAATACAGAAAGTCCTAAATGCAATGAATCGGAATCAAAAGTAATAACTCCTCGAAGTACAACAGTTGCATCATCAGATTCAAATTTGAGATCAACATTGTATCATCATAGAAGGAGGATGTCTAATCTGATCTAA 1881 0.3993 MLVSNGEEKILLSSENETEITKSDSVDGLLPVSTVYTDVGIVPEQQKNELEHFISNLQRELEEPRVKQRIVDEKRREALSKILDIKGSIRVFCRIRPNHLTEKRRNSEPVSAGSERIRVKLGGTRKDFEFDKVFPQETGQESVFVEVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFRQASMDGSSSFTFSMSMLEVYMGNVRDLLAPRQSSRPHENMTKCNLNIQTDPKGLVEIEGLSEVQISDCAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDTSEAKSETSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVLAALKRKKCHVPYRNSKLTQLLRDSLGDGSKVLMLVHISPSEEDVCETVCSLNFAKRARAIESNREVPMELKKQREKKIMELEEDIKEAEKQRQSLREQIQNIELKLCENKKLFSTTYSLQESDDLVTSASLKDDFKEVIETPKTSKKNIQRSVTNSVPRFMSSTVASRHRQIASEQEIGGRTKSLRSVVTRSSIQFPCSQSLSYSDLRIKTILRSSTGKSRYAETNNVPNTESPKCNESESKVITPRSTTVASSDSNLRSTLYHHRRRMSNLI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04009 626 SMART kinesin_4 86 421 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 454 IPR027417 -
Trre1g04009 626 Coils Coil 424 458 - -
Trre1g04009 626 PRINTS Kinesin heavy chain signature 314 332 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 PRINTS Kinesin heavy chain signature 157 178 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 PRINTS Kinesin heavy chain signature 282 299 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 PRINTS Kinesin heavy chain signature 363 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 ProSiteProfiles Kinesin motor domain profile. 88 413 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 PANTHER KINESIN-LIKE PROTEIN KLP-3 45 585 IPR027640 GO:0003777|GO:0007018
Trre1g04009 626 Pfam Kinesin motor domain 96 413 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04009 626 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 42 415 - -
Trre1g04009 626 Gene3D Kinesin motor domain 83 458 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04009 Trre-Chr1 44872981 44876082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04009 75 413 Calmodulin-binding Proteins AT5G65930 40.407 2.70e-70 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04009 - - gmx:100785581 966.066