Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04008 ATGACATCTGCCTTAAGAGTCGATCAATTATGGCTATGTTTCCAAAACCGTCGCCTTGAAATTCCTAAGGAAGTTGATCCATTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTCACAGTGGCTCTAAAGCCCTTGCAACGTCTGGTTATCCCATCTTATCAAGACATGGTAGCTTCACCTCTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 252 0.4444 MTSALRVDQLWLCFQNRRLEIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDMVASPLPQEISVNSTP 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04008 83 Gene3D Transferase(Phosphotransferase) domain 1 3 80 - -
Trre1g04008 83 SUPERFAMILY Protein kinase-like (PK-like) 7 76 IPR011009 -
Trre1g04008 83 Pfam Protein tyrosine and serine/threonine kinase 13 52 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04008 Trre-Chr1 44870883 44872097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04008 12 64 MAP Kinase Kinase Kinase AT5G11850 60.377 1.42e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre1g04008 PK_Tyr_Ser-Thr 1.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04008 - - gmx:100817822 137.887