Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03996 ATGGATGGTACAAATGAGCAGCCAGGGATTATTCCTCGTGCTCTCGAAGAGCTCTTTCGTCAAGCCTCGATGGACGGTTCTCATTCTTTTACTTTTTCAATGAGTATGTTGGAAGTTTACATGGGCAATGTTAGGGATCTGCTGGCTCCAAGACAGTCTTCTAGACCACATGAAAATATGACAAAATGTAATCTCAACATCCAAACAGATCCAAAGGGATTGGTGGAAATTGAGGGTCTCTCAGAAGTGCAGATTTCTGATTGTGCTAAAGCCAAATGGTGGTACAACAAGGGAAGACGATTCAGATCGACATCGTGGACTAATGTGAATGAGGCATCAAGCAGGTCACACTGCTTGACAAGGATAAGCATATTTAGACGCGGGGATACTTCGGAAGCCAAAAGCGAAACAAGTAAGTTGTGGATGGTTGATCTTGGAGGCAGTGAACGGTTGCTGAAAACCGGGGCCAAAGGACTAACACTTGACGAAGGACGAGCTATTAATCTCTCTCTTTCAGCTCTAGCTGATGTCCTAGCAGCTTTGAAGAGAAAGAAGTGTCATGTTCCTTACAGAAATAGCAAGCTGACCCAACTACTGAGAGATTCTCTAGGTGATGGCTCAAAGGTCTTGATGCTCGTGCATATTAGCCCTTCCGAAGAAGATGTTTGCGAGACAGTTTGTTCATTAAACTTTGCTAAGAGAGCGAGAGCAATAGAGTCTAATAGAGAAGTACCAATGGAATTGAAGAAGCAAAGGGAGAAAAAAATTATGGAGCTCGAGGATGACATTAAGGAAGCTGAAAAGCAACGTCAAAGTTTAAGGGATCAAATACAGAATATCGAGTTAAAGTTATGCGAGAATAAAAAGCTCTTTTCAACCACATATAGTCTTCAGGAAAGTGATGACTTGGTAACTTCTGCTAGCCTAAAAAATGATTTCAAAGAGGTCATTGAAACACCTAAAACATCTAAGAAGAATATTCAAAGAAGTGTCACAAACTCAGTGCCTCGATTCATGAGTTCAACTGTTGCCAGTCGGCATAGGCAAATTGCGTCTGAACAAGAAATTGGTGGGAGAACAAAAAGTTTAAGATCAGTAGTCACCAGAAGTTCAATCCAGTTTCCATGTTCACAATCGTTAAGTTATTCAGATCTTCGCATCAAAACAATACTGCGAAGTTCAACTGGAAAATCTCGGTATGCTGAAACAAATAATGTTCCAAATACAGAAAGTCCTAAATGCAATGAATCGGAATCAAAAGTAATAACTCCTCGAAGTACAACAGTTGCATCATCAGATTCAAATTTGAGATCAACATTGTATCATCATAGAAGGAGGATGTCTAATCTGATCTAA 1356 0.4034 MDGTNEQPGIIPRALEELFRQASMDGSHSFTFSMSMLEVYMGNVRDLLAPRQSSRPHENMTKCNLNIQTDPKGLVEIEGLSEVQISDCAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDTSEAKSETSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVLAALKRKKCHVPYRNSKLTQLLRDSLGDGSKVLMLVHISPSEEDVCETVCSLNFAKRARAIESNREVPMELKKQREKKIMELEDDIKEAEKQRQSLRDQIQNIELKLCENKKLFSTTYSLQESDDLVTSASLKNDFKEVIETPKTSKKNIQRSVTNSVPRFMSSTVASRHRQIASEQEIGGRTKSLRSVVTRSSIQFPCSQSLSYSDLRIKTILRSSTGKSRYAETNNVPNTESPKCNESESKVITPRSTTVASSDSNLRSTLYHHRRRMSNLI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03996 451 Coils Coil 249 283 - -
Trre1g03996 451 PRINTS Kinesin heavy chain signature 107 124 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 PRINTS Kinesin heavy chain signature 188 209 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 PRINTS Kinesin heavy chain signature 139 157 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 410 IPR027640 GO:0003777|GO:0007018
Trre1g03996 451 Gene3D Kinesin motor domain 1 283 IPR036961 -
Trre1g03996 451 Pfam Kinesin motor domain 1 238 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 ProSiteProfiles Kinesin motor domain profile. 1 238 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 SMART kinesin_4 1 246 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03996 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03996 Trre-Chr1 44810705 44812957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03996 3 238 Calmodulin-binding Proteins AT5G65930 41.176 1.02e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03996 - - gmx:100785581 694.501