Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03995 ATGGATGGACATAATGTGTGTGTTTTCGCTTACGGTCAAACAGGCACAGGCAAAACATTCACCATGGATGGTACAAATGAGCAGCCAGGGATTATTCCTCGTGCTCTCGAAGAGCTCTTTCGTCAAGCCTCGATGGACGGTTCTCATTCTTTTACTTTTTCAATGAGTATGTTGGAAGTTTACATGGGCAATGTTAGGGATCTGCTGGCTCCAAGACAGTCTTCTAGACCACATGAAAATATGACAAAATGTAATCTCAACATCCAAACAGATCCAAAGGGATTGGTGGAAATTGAGGGTCTCTCAGAAGTGCAGATTTCTGATTGTGCTAAAGCCAAATGGTGGTACAACAAGGGAAGACGATTCAGATCGACATCGTGGACTAATGTGAATGAGGCATCAAGCAGGTCACACTGCTTGACAAGGATAAGCATATTTAGACGCGGGGATACTTCGGAAGCCAAAAGCGAAACAAGTAAGTTGTGGATGGTTGATCTTGGAGGCAGTGAACGGTTGCTGAAAACCGGGGCCAAAGGACTAACACTTGACGAAGGACGAGCTATTAATCTCTCTCTTTCAGCTCTAGCTGATGTCCTAGCAGCTTTGAAGAGAAAGAAGTGTCATGTTCCTTACAGAAATAGCAAGCTGACCCAACTACTGAGAGATTCTCTAGGTGATGGCTCAAAGGTCTTGATGCTCGTGCATATTAGCCCTTCCGAAGAAGATGTTTGCGAGACAGTTTGTTCATTAAACTTTGCTAAGAGAGCGAGAGCAATAGAGTCTAATAGAGAAGTACCAATGGAATTGAAGAAGCAAAGGGAGAAAAAAATTATGGAGCTCGAGGATGACATTAAGGAAGCTGAAAAGCAACGTCAAAGTTTAAGGGATCAAATACAGAATATCGAGTTAAAGTTATGCGAGAATAAAAAGCTCTTTTCAACCACATATAGTCTTCAGGAAAGTGATGACTTGGTAACTTCTGCTAGCCTAAAAAATGATTTCAAAGAGGTCATTGAAACACCTAAAACATCTAAGAAGAATATTCAAAGAAGTGTCACAAACTCAGTGCCTCGATTCATGAGTTCAACTGTTGCCAGTCGGCATAGGCAAATTGCGTCTGAACAAGAAATTGGTGGGAGAACAAAAAGTTTAAGATCAGTAGTCACCAGAAGTTCAATCCAGTTTCCATGTTCACAATCGTTAAGTTATTCAGATCTTCGCATCAAAACAATACTGCGAAGTTCAACTGGAAAATCTCGGTATGCTGAAACAAATAATGTTCCAAATACAGAAAGTCCTAAATGCAATGAATCGGAATCAAAAGTAATAACTCCTCGAAGTACAACAGTTGCATCATCAGATTCAAATTTGAGATCAACATTGTATCATCATAGAAGGAGGATGTCTAATCTGATCTAA 1419 0.4052 MDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFRQASMDGSHSFTFSMSMLEVYMGNVRDLLAPRQSSRPHENMTKCNLNIQTDPKGLVEIEGLSEVQISDCAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDTSEAKSETSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVLAALKRKKCHVPYRNSKLTQLLRDSLGDGSKVLMLVHISPSEEDVCETVCSLNFAKRARAIESNREVPMELKKQREKKIMELEDDIKEAEKQRQSLRDQIQNIELKLCENKKLFSTTYSLQESDDLVTSASLKNDFKEVIETPKTSKKNIQRSVTNSVPRFMSSTVASRHRQIASEQEIGGRTKSLRSVVTRSSIQFPCSQSLSYSDLRIKTILRSSTGKSRYAETNNVPNTESPKCNESESKVITPRSTTVASSDSNLRSTLYHHRRRMSNLI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03995 472 ProSiteProfiles Kinesin motor domain profile. 1 259 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 Gene3D Kinesin motor domain 1 304 IPR036961 -
Trre1g03995 472 PRINTS Kinesin heavy chain signature 209 230 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 PRINTS Kinesin heavy chain signature 128 145 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 PRINTS Kinesin heavy chain signature 160 178 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 PRINTS Kinesin heavy chain signature 3 24 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 SMART kinesin_4 1 267 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 Coils Coil 270 304 - -
Trre1g03995 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 299 IPR027417 -
Trre1g03995 472 Pfam Kinesin motor domain 1 259 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g03995 472 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 431 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03995 Trre-Chr1 44810705 44813020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03995 1 259 Calmodulin-binding Proteins AT5G65930 44.061 2.12e-59 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03995 - - gmx:100785581 740.339