Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03994 ATGAAGAACATCTTCAAGAAGCTTCATATAGGTAGCAGCCATGATTCTCCTCATCGATCCAATGAAACTCCGCCACCTGTACCATCGCCGTCTTGTGCCGCCGAAGATGTTCAAAGTTCCGGTACTTCTACAGTAACTCCAACTTCCTCATCTCCATCTACAGCACCGGTTCCTGCTGCTTTCTCCGGTAGCGGCGGTGTGTCTGCGGTGGTCAATCGGCAAGATTTTTTCTCGTCGGAGGAGGAATTTCAGGTGCAGCTTGCCCTAGCTATCAGTGCTTCAAATTCGGAGTTCCGTAGTGATGATCCGGAGAAGGATCAGATCCATGCGGCGACGCTGCTCAGTTTGGGAGGACATCGGATTGATTCGACCGGGAATAAAGATGATGTGGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAACGTGCTTGACTATGAGGAGAAAGTAGTCGATGGTTTTTATGATGTATATGGACTCTACAATGACCCGGCAATGCAAGGAAAGATGCCATCTCTAGCAGATCTTGAAACAAACCCTGGCGGTTCTAGCTTGGAAGTGGTCATAGTTAATCGAACAATTGATCCTGCCCTTGAAGAGCTTGTGCAAATTGCACAATGTATATCATTCGACTGCCCTGTCTCTGAGATTGGTATTTTGGTACAAAGGCTTGCCGAACTTGTTACTAGCCATATGGGTGGCCCTGTAAAGGATGCTAATATTATATTAGCAAGATGGACAGAAAGAAGTACAGAGTTAAGGACATCTCTTCACACAAGTGTACTGCCGCTTGGGTCCTTAGATATTGGACTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTGGTTAAAGGTAGTCATTACACTGGGGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCAAAGGATAGTGCCTTTAAGTCTTACAACCCCAAGATTGTGCCGAGTTTTCCTTCTGCTGAGGAAACTGAGCCTTCTTACTCAAGACCTGTACTACCACCATCTAATGGTGAAGGTAGTAGTCAGACTTCTGTGATAGAAGGTAATGCGCTGCCTTGGAATGGAAAATCATATACCGAGAAGTCCGAGTATATGCCTTCAAACTTTGGTCTGAACAGAGACACTGGCGTTGGTCCTTCTAAAATTCCTAATAGAGGGAGTCCTAACCAACGAGAAAATCTGCCACCGTCATTTCCTAATAGAGGGAGTCCTAACCAACGGGAAAATCTGCCACCGTCATATGGTAATTCTTTGTACAAAGGCACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTGCCATATCCCCAAAACAACCCCAACGACCCTCAGAACCTTTTTGCAGAACTGAACCCATTCTTGATAAAAGGGACTGGGAAGCCTTCTGTGCATAACAAACCTCCTGTGGAAAATAAACCTCCTGAGCACGGTACAAAAAACAAAAATGTTTCTGGTAGACCCGTGTCACCACTGATGTGGAAGAATCAGCATGCTTACAACGAAGTCCCCAGGAAAAACAATCATAACCCTAATGAATATAACCCTCCTTTATTTGCTCCCAATATTTCTTTCAGACCTGAAAATACTGATCTCGGCACTTCCAATTCATCATACAGTTCAAATATAAACAATGATATTAGTTCTCAAACTTCGGCACAAATTACTGGTTCAGTCTCACCAGCTGGTGCAGGTGAACTGAACCGGATTGAGGGTCTCAATGCTAATTTTAAAAGGGGTGATTTGGGAAGTTCTCAAAATGTCATGGTTAACGAACTCGAAAACACTGAACTTAGCCATCATGACAGGAAGAAGTGCATATATGACAGATTCATGGGAAGCAATTTGGAATTAAATGATTCAGATAGTCCTAGCTCTTCAATTGATTACGTTACAAATAGGGTCGATCAAATATTGGACGATGCAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTTGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCGTGCAGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCCGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTCACCCGGCCTCCTAATCTCTCGATCATTTCAGAGTTTCTCCCGAGAGGAAGCTTGTACCGAATTCTTCACCGCCCTAATTGTCAGATTGACGAGAAACAAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACACCTACAATTGTTCACAGAGATCTGAAGTCCCCGAATCTTTTGGTTGATAAGAATTGGAATGTTAAGGTATGCGATTTTGGGTTATCAAGGTTGAAGCATAACACATTTTTATCATCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAACGAGCCTTCAAATGAGAAGTGTGATGTTTATAGTTTTGGTGTCATCCTATGGGAGCTTGCCACTTTAAGGTTGCCATGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCTGTAGGTTTCCAAAACCGTCGCCTTGAAATTCCTAAGGAAGTTGATCCATTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTCACAGTGGCTCTAAAGCCCTTGCAACGTCTGGTTATCCCATCTTATCAAGACATGGTAGCTTCACCTCTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 2928 0.4395 MKNIFKKLHIGSSHDSPHRSNETPPPVPSPSCAAEDVQSSGTSTVTPTSSSPSTAPVPAAFSGSGGVSAVVNRQDFFSSEEEFQVQLALAISASNSEFRSDDPEKDQIHAATLLSLGGHRIDSTGNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGLYNDPAMQGKMPSLADLETNPGGSSLEVVIVNRTIDPALEELVQIAQCISFDCPVSEIGILVQRLAELVTSHMGGPVKDANIILARWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIKMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILNAKDSAFKSYNPKIVPSFPSAEETEPSYSRPVLPPSNGEGSSQTSVIEGNALPWNGKSYTEKSEYMPSNFGLNRDTGVGPSKIPNRGSPNQRENLPPSFPNRGSPNQRENLPPSYGNSLYKGTLGMNAVGDGTRLNVNVVPYPQNNPNDPQNLFAELNPFLIKGTGKPSVHNKPPVENKPPEHGTKNKNVSGRPVSPLMWKNQHAYNEVPRKNNHNPNEYNPPLFAPNISFRPENTDLGTSNSSYSSNINNDISSQTSAQITGSVSPAGAGELNRIEGLNANFKRGDLGSSQNVMVNELENTELSHHDRKKCIYDRFMGSNLELNDSDSPSSSIDYVTNRVDQILDDADVGECEIPWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDMVASPLPQEISVNSTP 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03994 975 MobiDBLite consensus disorder prediction 364 385 - -
Trre1g03994 975 FunFam Serine/threonine-protein kinase CTR1 773 956 - -
Trre1g03994 975 ProSitePatterns Protein kinases ATP-binding region signature. 700 722 IPR017441 GO:0005524
Trre1g03994 975 MobiDBLite consensus disorder prediction 1 63 - -
Trre1g03994 975 MobiDBLite consensus disorder prediction 352 387 - -
Trre1g03994 975 MobiDBLite consensus disorder prediction 417 447 - -
Trre1g03994 975 Gene3D Transferase(Phosphotransferase) domain 1 773 955 - -
Trre1g03994 975 MobiDBLite consensus disorder prediction 499 530 - -
Trre1g03994 975 MobiDBLite consensus disorder prediction 33 58 - -
Trre1g03994 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Trre1g03994 975 Pfam Ethylene-responsive protein kinase Le-CTR1 131 329 - -
Trre1g03994 975 CDD STKc_MAP3K-like 700 943 - -
Trre1g03994 975 SUPERFAMILY Protein kinase-like (PK-like) 685 966 IPR011009 -
Trre1g03994 975 ProSiteProfiles Protein kinase domain profile. 694 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03994 975 Gene3D Phosphorylase Kinase; domain 1 687 771 - -
Trre1g03994 975 MobiDBLite consensus disorder prediction 399 447 - -
Trre1g03994 975 Pfam Protein tyrosine and serine/threonine kinase 695 944 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 74 949 - -
Trre1g03994 975 PRINTS Tyrosine kinase catalytic domain signature 873 895 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 PRINTS Tyrosine kinase catalytic domain signature 917 939 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 PRINTS Tyrosine kinase catalytic domain signature 768 781 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 PRINTS Tyrosine kinase catalytic domain signature 854 864 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 PRINTS Tyrosine kinase catalytic domain signature 807 825 IPR001245 GO:0004672|GO:0006468
Trre1g03994 975 SMART serkin_6 694 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03994 975 FunFam Serine/threonine-protein kinase isoform 1 685 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03994 Trre-Chr1 44800441 44808401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03994 1 930 MAP Kinase Kinase Kinase AT1G08720 54.782 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre1g03994 PK_Tyr_Ser-Thr 2.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03994 - - aprc:113870732 1527.3