Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03993 ATGAGTGAAAGAGGTAAAAAAGAGAGGATGAAGAACATCTTCAAGAAGCTTCATATAGGTAGCAGCCATGATTCTCCTCATCGATCCAATGAAACTCCGCCACCTGTACCATCGCCGTCTTGTGCCGCCGAAGATGTTCAAAGTTCCGGTACTTCTACAGTAACTCCAACTTCCTCATCTCCATCTACAGCACCGGTTCCTGCTGCTTTCTCCGGTAGCGGCGGTGTGTCTGCGGTGGTCAATCGGCAAGATTTTTTCTCGTCGGAGGAGGAATTTCAGGTGCAGCTTGCCCTAGCTATCAGTGCTTCAAATTCGGAGTTCCGTAGTGATGATCCGGAGAAGGATCAGATCCATGCGGCGACGCTGCTCAGTTTGGGAGGACATCGGATTGATTCGACCGGGAATAAAGATGATGTGGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAACGTGCTTGACTATGAGGAGAAAGTAGTCGATGGTTTTTATGATGTATATGGACTCTACAATGACCCGGCAATGCAAGGAAAGATGCCATCTCTAGCAGATCTTGAAACAAACCCTGGCGGTTCTAGCTTGGAAGTGGTCATAGTTAATCGAACAATTGATCCTGCCCTTGAAGAGCTTGTGCAAATTGCACAATGTATATCATTCGACTGCCCTGTCTCTGAGATTGGTATTTTGGTACAAAGGCTTGCCGAACTTGTTACTAGCCATATGGGTGGCCCTGTAAAGGATGCTAATATTATATTAGCAAGATGGACAGAAAGAAGTACAGAGTTAAGGACATCTCTTCACACAAGTGTACTGCCGCTTGGGTCCTTAGATATTGGACTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTGGTTAAAGGTAGTCATTACACTGGGGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCAAAGGATAGTGCCTTTAAGTCTTACAACCCCAAGATTGTGCCGAGTTTTCCTTCTGCTGAGGAAACTGAGCCTTCTTACTCAAGACCTGTACTACCACCATCTAATGGTGAAGGTAGTAGTCAGACTTCTGTGATAGAAGGTAATGCGCTGCCTTGGAATGGAAAATCATATACCGAGAAGTCCGAGTATATGCCTTCAAACTTTGGTCTGAACAGAGACACTGGCGTTGGTCCTTCTAAAATTCCTAATAGAGGGAGTCCTAACCAACGAGAAAATCTGCCACCGTCATTTCCTAATAGAGGGAGTCCTAACCAACGGGAAAATCTGCCACCGTCATATGGTAATTCTTTGTACAAAGGCACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTGCCATATCCCCAAAACAACCCCAACGACCCTCAGAACCTTTTTGCAGAACTGAACCCATTCTTGATAAAAGGGACTGGGAAGCCTTCTGTGCATAACAAACCTCCTGTGGAAAATAAACCTCCTGAGCACGGTACAAAAAACAAAAATGTTTCTGGTAGACCCGTGTCACCACTGATGTGGAAGAATCAGCATGCTTACAACGAAGTCCCCAGGAAAAACAATCATAACCCTAATGAATATAACCCTCCTTTATTTGCTCCCAATATTTCTTTCAGACCTGAAAATACTGATCTCGGCACTTCCAATTCATCATACAGTTCAAATATAAACAATGATATTAGTTCTCAAACTTCGGCACAAATTACTGGTTCAGTCTCACCAGCTGGTGCAGGTGAACTGAACCGGATTGAGGGTCTCAATGCTAATTTTAAAAGGGGTGATTTGGGAAGTTCTCAAAATGTCATGGTTAACGAACTCGAAAACACTGAACTTAGCCATCATGACAGGAAGAAGTGCATATATGACAGATTCATGGGAAGCAATTTGGAATTAAATGATTCAGATAGTCCTAGCTCTTCAATTGATTACGTTACAAATAGGGTCGATCAAATATTGGACGATGCAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTTGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCGTGCAGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCCGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTCACCCGGCCTCCTAATCTCTCGATCATTTCAGAGTTTCTCCCGAGAGGAAGCTTGTACCGAATTCTTCACCGCCCTAATTGTCAGATTGACGAGAAACAAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACACCTACAATTGTTCACAGAGATCTGAAGTCCCCGAATCTTTTGGTTGATAAGAATTGGAATGTTAAGGTATGCGATTTTGGGTTATCAAGGTTGAAGCATAACACATTTTTATCATCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAACGAGCCTTCAAATGAGAAGTGTGATGTTTATAGTTTTGGTGTCATCCTATGGGAGCTTGCCACTTTAAGGTTGCCATGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCTGTAGGTTTCCAAAACCGTCGCCTTGAAATTCCTAAGGAAGTTGATCCATTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTCACAGTGGCTCTAAAGCCCTTGCAACGTCTGGTTATCCCATCTTATCAAGACATGGTAGCTTCACCTCTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 2955 0.4389 MSERGKKERMKNIFKKLHIGSSHDSPHRSNETPPPVPSPSCAAEDVQSSGTSTVTPTSSSPSTAPVPAAFSGSGGVSAVVNRQDFFSSEEEFQVQLALAISASNSEFRSDDPEKDQIHAATLLSLGGHRIDSTGNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGLYNDPAMQGKMPSLADLETNPGGSSLEVVIVNRTIDPALEELVQIAQCISFDCPVSEIGILVQRLAELVTSHMGGPVKDANIILARWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIKMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILNAKDSAFKSYNPKIVPSFPSAEETEPSYSRPVLPPSNGEGSSQTSVIEGNALPWNGKSYTEKSEYMPSNFGLNRDTGVGPSKIPNRGSPNQRENLPPSFPNRGSPNQRENLPPSYGNSLYKGTLGMNAVGDGTRLNVNVVPYPQNNPNDPQNLFAELNPFLIKGTGKPSVHNKPPVENKPPEHGTKNKNVSGRPVSPLMWKNQHAYNEVPRKNNHNPNEYNPPLFAPNISFRPENTDLGTSNSSYSSNINNDISSQTSAQITGSVSPAGAGELNRIEGLNANFKRGDLGSSQNVMVNELENTELSHHDRKKCIYDRFMGSNLELNDSDSPSSSIDYVTNRVDQILDDADVGECEIPWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDMVASPLPQEISVNSTP 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03993 984 MobiDBLite consensus disorder prediction 508 539 - -
Trre1g03993 984 MobiDBLite consensus disorder prediction 408 457 - -
Trre1g03993 984 SMART serkin_6 703 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03993 984 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 958 - -
Trre1g03993 984 MobiDBLite consensus disorder prediction 373 394 - -
Trre1g03993 984 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524
Trre1g03993 984 MobiDBLite consensus disorder prediction 42 67 - -
Trre1g03993 984 Gene3D Transferase(Phosphotransferase) domain 1 782 964 - -
Trre1g03993 984 Gene3D Phosphorylase Kinase; domain 1 696 780 - -
Trre1g03993 984 PRINTS Tyrosine kinase catalytic domain signature 882 904 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 PRINTS Tyrosine kinase catalytic domain signature 926 948 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 PRINTS Tyrosine kinase catalytic domain signature 863 873 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 PRINTS Tyrosine kinase catalytic domain signature 777 790 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 PRINTS Tyrosine kinase catalytic domain signature 816 834 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 CDD STKc_MAP3K-like 709 952 - -
Trre1g03993 984 Pfam Ethylene-responsive protein kinase Le-CTR1 140 338 - -
Trre1g03993 984 FunFam Serine/threonine-protein kinase isoform 1 694 781 - -
Trre1g03993 984 ProSiteProfiles Protein kinase domain profile. 703 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03993 984 SUPERFAMILY Protein kinase-like (PK-like) 694 975 IPR011009 -
Trre1g03993 984 MobiDBLite consensus disorder prediction 426 457 - -
Trre1g03993 984 MobiDBLite consensus disorder prediction 1 72 - -
Trre1g03993 984 Pfam Protein tyrosine and serine/threonine kinase 704 953 IPR001245 GO:0004672|GO:0006468
Trre1g03993 984 MobiDBLite consensus disorder prediction 361 396 - -
Trre1g03993 984 FunFam Serine/threonine-protein kinase CTR1 782 965 - -
Trre1g03993 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Trre1g03993 984 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03993 Trre-Chr1 44800414 44808401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03993 10 939 MAP Kinase Kinase Kinase AT1G08720 54.782 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre1g03993 PK_Tyr_Ser-Thr 2.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03993 - - aprc:113870732 1535.01