Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03977 ATGCATCCAAAGAAAAACCAGTACATGCCAGCAGATATTTTGTTGGTCGAGAAATTCAGTGAACCGGTGAGTTGGGGAAGTTTTGCAATGATTGAGGCAGAAAGAAGACTTTTGGCAAATGTACTTTTAGACTATGATAACCAACATTTTGTTTTGCTATCTGATAGGTCATTTTTCTTATCTGGTTTCTCTCTTCGGTATAAACTCATGCTTGGTTTTGAAGATGTAGGCTTCCTGAGTTTTGTTTATTGTGAATTGATCATCAAAATATCTGTTCACTACATTTTATATGATGAATTACACCATTCAGCCAATAAAGCTGCTGCAAAGTATGATAATGCCTCTATTGACTCAAAGATTGAGTTTTACAAGGAGGGATTGACCCCATATACAGAGGCTAAGCTTCCTCTTATAAGTGATGTTCCTGAAGGATGTGTAATATTGAGAGAGCATGTTCCTATTAGCAATCTCTTTACTTGTCTTTGGTTCAATGAAGCGCAACTTTGTAGTTCAGATTTAGATTTGTCTTCAAGCTTTGTTCAATCCCTAAAGATTCGTCCTCAAGCTTCAGACTCATTTTTATCTTCAAGCTTCAGATTCCTTCAAATATTCAGCTTCAGCTTCGTAACACGTTTGAAATGTGGTGGTTTCATCTTTGCTCTTCGATTTAACCACGCTATGGTAGATGGAGTTGGCACAATTCATTTCATGTTAGCGGTGACAGGAATAGCTAAGGGAGCAAAACAACCTCCAATTCAACCCTCATGGAACAGAGAGCGTCTAAGGGCAAGGGAACAAGCATGCGTCACACTCAACCACCGCGAATACGAACAATTATCTGACATTCAATCTGACACAATTTTAACTGCAACAGAATTTTCAGAACAATCTTTTTTCTTCGGCCCTACTGAAATAGCCGCAATTCGAAGCTTACTTCCACAAGATCTCGATAGCAAGTCAACCACCTTCGAAGTCCTTACATCGTACATTTGGCGTTGCCGCACGAAAGTGTTGCAGCCGAATCCAAACGAAGAGGTTCGAATGATGTGCATTGTGGACGCACGTGATAAATTCGACCCTCCAATTCCATTTGGTTACTATGGAAATTGTTTTGCTTTCCCTGCGGCTGTTACAACCGCAGGGGAGCTTTGTGAAAAGCCGTTAGAGTTTGCTTTGGAATTGATAAAAAAAGCGCGCGATGAAGTGAGTGAGGAATATATGCATTCTGTGGCGGATCTAATGGTGACTAAAGGAAAGCCATTGTTTACTATAGTGAGGTCTTGTCTTGTGTTGGATACCACATATGCTGGACTTAGAAATTTGGATTTTGGATGGGGGAAGGCAGTGTATGGTGGAATGGCTAAACCTGGGGCTGGGACTTTTCCTTCAGTGCATTTTCATGTTCCGGGTCAAAATGCAAAAGGGAAGGAAGGTATATTTGTTTTGATATCATTGCCTACTAAATTTATGTCAGCTTTTGCCAAAGAGTTGGATGATTTGATTGCTTGA 1509 0.4023 MHPKKNQYMPADILLVEKFSEPVSWGSFAMIEAERRLLANVLLDYDNQHFVLLSDRSFFLSGFSLRYKLMLGFEDVGFLSFVYCELIIKISVHYILYDELHHSANKAAAKYDNASIDSKIEFYKEGLTPYTEAKLPLISDVPEGCVILREHVPISNLFTCLWFNEAQLCSSDLDLSSSFVQSLKIRPQASDSFLSSSFRFLQIFSFSFVTRLKCGGFIFALRFNHAMVDGVGTIHFMLAVTGIAKGAKQPPIQPSWNRERLRAREQACVTLNHREYEQLSDIQSDTILTATEFSEQSFFFGPTEIAAIRSLLPQDLDSKSTTFEVLTSYIWRCRTKVLQPNPNEEVRMMCIVDARDKFDPPIPFGYYGNCFAFPAAVTTAGELCEKPLEFALELIKKARDEVSEEYMHSVADLMVTKGKPLFTIVRSCLVLDTTYAGLRNLDFGWGKAVYGGMAKPGAGTFPSVHFHVPGQNAKGKEGIFVLISLPTKFMSAFAKELDDLIA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03977 502 Pfam Protein of unknown function (DUF616) 90 187 IPR006852 -
Trre1g03977 502 Pfam Transferase family 209 498 - -
Trre1g03977 502 Pfam Core-2/I-Branching enzyme 20 68 IPR003406 GO:0016020|GO:0016757
Trre1g03977 502 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 204 497 - -
Trre1g03977 502 Gene3D - 277 497 IPR023213 -
Trre1g03977 502 Gene3D - 146 276 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03977 Trre-Chr1 44627545 44633206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03977 171 497 Monolignol Biosynthesis Gene Families AT5G48930 25.439 1.16e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03977 K19861 - gmx:100820325 433.721