Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03958 ATGGCCGCATTCTTTCAAAACGGTGTCGTTTCACCTAAACAAGAATTCGTTGAATTTCAAGCCGAATACGAAGAAGAAGTAGAACAAGAATTTGACGAAGTTTTAGTCGAACCAGACGAAACCGAAAAATCACCTTCCTCCGCCGTCCCCACCGTCATATTAGCCTTACCGAACGCCTCAGCATCGACCGTCGTCGACGACTCGCCTGAGCCAAAGCGTGACCAAATGGAAGAGAAGAACGATTCACGGAAACTGTTTCAGCGTCTCTGGACTGACGAAGATGAGATCGTAATCTTGCAAGGTTTTCTTGATTACAACGCGAATCGTGGATCGTCTTATCACAACGACACTGGTTCTTTCTATGATCAAATTAAGTCCAAGATTCAACTCGATTTCAACAAGAGCCAGCTTGTTGATAAGCTCCGAAGGTTGAAGAAAAAGTATCGGAACGTTCTTCAGAAATTTGATTCTGGTAAGGAATTTATCTTCAAAACTCCTCATGATCAAGCTACGTTTGAAATTTCACACAAAATTTGGAACAACGTCACTCCAATTGCCGTTGGTGTTCCAGTGGAAGACGATGAAGAAATTAGCCCTAACCCTAACCCTAATTCAGCTCATATGATAACACCGGTGAAGAATGAGCTGATTAATGAGAAGAAAACTGCGCAATCGCGTAAGCGATCGCGAGTGGAGGAGAAGGAGAAGCGTGAATTGAATGATTTTTCAGCTTTGACTAAAGATAATCATAATAATTCTGCTAATAACAATAGTAGCAATGTTGATGATGAAAATGGTGATAAAAGTAACGGTAGTCATACACATAACATACCTGGATTGATTGAAGAGACTGTTAAGAGTTGCTTGACCCCGTTGTTGAAGGAGTTATCGAGTCGTAACACCATGGGGAGTCCTTTTGGTTTTGGGGGAAGAGGATTTTCATTGGATCCTATGCCATTTAGTTTTTTGAATTTTGGGAATGGTGAAAAAGTGATGGATGAGAAGTGGAAGAAGCAACAGATATTGGAGTTGGAAGTGTACTCGAAGCGATTGGAGCTGGTGCAGGACGAGATCAAGGTTGCTTTGGAGGAGTTGCGATCGTCTTCCGAAGCTGGAGCTAGAGGAGGAGGAAACAACCATCAATAG 1146 0.4241 MAAFFQNGVVSPKQEFVEFQAEYEEEVEQEFDEVLVEPDETEKSPSSAVPTVILALPNASASTVVDDSPEPKRDQMEEKNDSRKLFQRLWTDEDEIVILQGFLDYNANRGSSYHNDTGSFYDQIKSKIQLDFNKSQLVDKLRRLKKKYRNVLQKFDSGKEFIFKTPHDQATFEISHKIWNNVTPIAVGVPVEDDEEISPNPNPNSAHMITPVKNELINEKKTAQSRKRSRVEEKEKRELNDFSALTKDNHNNSANNNSSNVDDENGDKSNGSHTHNIPGLIEETVKSCLTPLLKELSSRNTMGSPFGFGGRGFSLDPMPFSFLNFGNGEKVMDEKWKKQQILELEVYSKRLELVQDEIKVALEELRSSSEAGARGGGNNHQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03958 381 Coils Coil 344 371 - -
Trre1g03958 381 Pfam Protein of unknown function, DUF573 86 180 IPR007592 GO:0006355
Trre1g03958 381 PANTHER BNAANNG10740D PROTEIN-RELATED 37 364 IPR007592 GO:0006355
Trre1g03958 381 MobiDBLite consensus disorder prediction 245 277 - -
Trre1g03958 381 Coils Coil 134 154 - -
Trre1g03958 381 MobiDBLite consensus disorder prediction 219 244 - -
Trre1g03958 381 MobiDBLite consensus disorder prediction 60 80 - -
Trre1g03958 381 MobiDBLite consensus disorder prediction 192 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03958 Trre-Chr1 44321886 44323031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03958 33 372 GeBP Transcription Factor Family AT5G28040 44.920 1.75e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre1g03958 DUF573 9e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03958 - - psat:127097903 471.855