Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03957 ATGTTGTCCCCATTGGTTTCTTGGATTTTTTCACCCTCATCCTCTTCCTCCTCCTCATCCGAAGAAGAAAATCTTGACATTAACAATGAAGAATCAGACTATGAAAACTTTGAAAATGACAATGTGGAAGACCAAATGGAGAATGCGGATAATGACGAAAAAGACAATTTTCTAAGTCCATGCAACGTTGATGACACCATTCCCATTGCACTTGCGGCTTCTGATGCATTCCCCGCTGTGACGGTGGCCTTGCCTGCCCCCACAGATGACACAAACACCGCGACCACATCCGCTGCCACCACCATAGCAACACGCTCCACAAGACAACGCAACAACAAGTATTCAGGCGGCGTTAGACAATATCAGAGGTTATGGACAAAGCAGGACGAAATGGAACTGTTGAAAGGATATCTAGATTACATCAAACAGCAAGGAAAAACAGCTACCACTCTTCAAAGCGACGTAGCTTCGTTCTACGATCAAGTTATGCCTAAATTGAACACATATTTCAATAAGAACCAGCTTGTTGAGAAACTACGTAGGTTAAAGAGAAAACACAAGATGATTTTGGACAAAGGCAAAGAGGTTCAGGTTTCTTTCAAGATTCCACATGAACAGGCCATTTTCGAAACTTCCCACAAGATTTGGGGCAATGACACAGACAATGATGTTTTGGATGTTGATGAATCAAGACATGTTTCTGAAAGTCCTGATCTTATTGACAATGTTAGGGTGAAGAATGAACATGTTGAAAATCGTGAAGAAACAGATAAAAGGGTGCACAAACGTATGAGGTTAACAACAGATGATGCGAACACAAAAAATGACGAGAACTTTGGCGACGTTACTAGTATACATGGCTTCATTGAGGAAACCATGAGGTCCTGTTTCTCACCATTGTTGAAGGAATTGTTGGACGATGCTCCTGTAGAACCACTCGGTGCGTTGCCAATGATGTTATCCAGTGGGGAGGTGAGGGATGAGCAATGGTTAAAACGGAGGATTTTGGAGCTTGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAGGGTCAGATCAAGGCCAGATTGGAGGAGTTAAAATCTAGCTTAGATTGA 1095 0.4256 MLSPLVSWIFSPSSSSSSSSEEENLDINNEESDYENFENDNVEDQMENADNDEKDNFLSPCNVDDTIPIALAASDAFPAVTVALPAPTDDTNTATTSAATTIATRSTRQRNNKYSGGVRQYQRLWTKQDEMELLKGYLDYIKQQGKTATTLQSDVASFYDQVMPKLNTYFNKNQLVEKLRRLKRKHKMILDKGKEVQVSFKIPHEQAIFETSHKIWGNDTDNDVLDVDESRHVSESPDLIDNVRVKNEHVENREETDKRVHKRMRLTTDDANTKNDENFGDVTSIHGFIEETMRSCFSPLLKELLDDAPVEPLGALPMMLSSGEVRDEQWLKRRILELEVYLNRLELLQGQIKARLEELKSSLD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03957 364 Coils Coil 20 47 - -
Trre1g03957 364 Coils Coil 172 192 - -
Trre1g03957 364 PANTHER BNAANNG10740D PROTEIN-RELATED 13 358 IPR007592 GO:0006355
Trre1g03957 364 MobiDBLite consensus disorder prediction 24 39 - -
Trre1g03957 364 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g03957 364 MobiDBLite consensus disorder prediction 1 39 - -
Trre1g03957 364 Pfam Protein of unknown function, DUF573 122 217 IPR007592 GO:0006355
Trre1g03957 364 Coils Coil 342 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03957 Trre-Chr1 44318438 44319532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03957 62 361 GeBP Transcription Factor Family AT5G28040 35.262 2.59e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre1g03957 DUF573 4.2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03957 - - tpra:123888796 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05182 13 57306431 57307756 Trre1g03957 1 44318438 44319532 PCT