Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03953 ATGGCGGACAAGGCAGTCACCATCCGAACTAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAAGGCTGAGCTAAAGGAGAAGCTTGCAAGAATCTATGATGTGAAGGACCCAAACACCGTGTTTGTCTTCAAGTTCAGAACTCATTTTGGTGGTGGCAAGTCCACAGGTTTTGGTTTGATCTATGATTCTGTGGAGAATGCTAAGAAATATGAGCCAAAATACAGACTTATCAGGAACGGACTTGATACTAAGGTTGAAAAGTCTAGGAAGCAAATGAAGGAAAGAAAGAACAGATCAAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTGGTGATGCTGCCAAGGGTGGAAAGAAGAAATAA 414 0.4275 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKIRGVKKTKAGDAAKGGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03953 137 FunFam 40S ribosomal protein S24 1 137 - -
Trre1g03953 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre1g03953 137 Gene3D - 1 132 - -
Trre1g03953 137 MobiDBLite consensus disorder prediction 98 137 - -
Trre1g03953 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre1g03953 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Trre1g03953 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre1g03953 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03953 Trre-Chr1 44280376 44282074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03953 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 1.32e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03953 K02974 - gmx:100499852 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03953 1 44280376 44282074 Trre1g03953 1 44280376 44282074 ECH
Trre13g05183 13 57310728 57313129 Trre1g03953 1 44280376 44282074 PCT