Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03935 ATGAATGGAGTGACACACCTTGAAGAAGGTGACTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAAACAGTATATAAGGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGTTGTATGATTTCTTACAAAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTATTGAAAACATTGAAACACCAAAACATTATGAAATTTTACACCTCTTGGGTTGATACTGCTAATAGGAATATTAACTTTGTAACTGAAATGTTCACTTCTGGTACACTTAGACAGTATAGGCAAAAACACAAGAGAGTTAACATCCGAGCGGTGAAGCATTGGTGCATACAGATCCTGAGAGGACTTCTCTATCTACATAGCCATGACCCGCCAGTGATCCATAGAGATCTCAAATGTGATAACATTTTTGTCAATGGAAATCAAGGAGAAGTCAAAATTGGGGATCTTGGTCTAGCCGCAATTCTTCGGAAATCTCATGCTGCACATTGTGTTGGAACGCCCGAGTTCATGGCACCAGAAGTATACGAAGAGTCGTATAATGAACTAGTCGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGCACGCATCCAGCTCAAATATACAAGAAAGTTATGTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTTAATGATCCGGAAGTGCGGCAATTTGTTGATAAATGCTTGGCCACAGTGTCTCTAAGACTTTCTGCAAGGGAGCTTCTCAATGACCCTTTTCTTCAAGTCGATGATTATGAATATGATTTGAAACCTGTAGACAGTGGAAAATTTGATGACTTTGGTCCCCTCTTCAGGCAGCCACTCTACGATCTTCATCGAGGCTTTAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGTTATGAAGGAGACTCGTATATTCAGCCGGCTGATAATGAAGCCTGTGGAATCGAACTTTTTGAGCACCATGATGATGACGAACCCTCTGAACATGTTGACATAAGTATCAAGGGCAAGAAGAAAGAGGACGGAGGCATATTTTTGAGACTAAGAATTTCTGATAAAGATGGTCACATTCGGAATATTTATTTCCCATTTGACATAGAGCTGGACACAGCCATAAGTGTGGCGACTGAGATGGTTGGAGAACTTGACATTACCGATCAGGATGTTACCAGTATAGCAGATATGATAGATGGGGCAATCGCTTCCTTGGTACCTGAATGGGAATCCGGACCAGGAATCATTGAAACTCCTCCTTTTGCAAATCAAGGTTTCTGCCGCAATTGTGTGTCTAATCACACTTCAAGTGGCTCCCTCATGGAGTTTCTTTCGCATAATCAGGGTAACTTGCAACTTCCCGAATGTTGTAAGCACGGATGTGCTTCAATGCATGGCCGGTTCGAGGAGATTACATTCCCATCAGAGGAGTATGACAATCATGTTAGAGAGAATCTGAACATATCAAACCGATCGGATTGCTTGCAATATCAGGTTCAATGGAATCAGCATGAAAGCCGTGAACTGAGTCCGGTAGAGTCAGATCAAAGTCATTCTGATGAACAAATAGATAAATCAATATTAGCTGAAGATCAAGGACAGAATGTTTGGGAAAATAAATTTCCTGTTGGTGCAACAATTTCCCCGAGATATTCATCAGGAACTCATGATTTCTCCAATATCAGATCGCTATATTGTGGTCTTGACAATCATCATGAGAAAGAAATGAGATGGCTCAAAGCAAAATACCAAATGGAATTACGGGAACGTAAGGATCAACAACTCGGGCTAATGGATAATAAAACTTCTCATAGCGGTAACGGAGGAGAGCACATAACAGATTATGCCGCCATTCTGTCACTTTCATTGGCAGAAACATTAAATGGAGGCAACAATGGGATTCGTTTGAAAACTGTTCATAAAAGCAGCCCCAATTCAGACACCGTAAGGAACCAAATTTGCGAGGCGATGGAATCCCCTGGTGGAGAAGGTATGGTTACTGCGAAGAGTTTTTATACTGGCTCGTTGCTTCCGCACTCTCTGCACAGGACAGTTTCTCTCCCTGTTGATGCTGTTGATATATAA 2169 0.4089 MNGVTHLEEGDSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHQNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCIQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVMSGKKPDALYKVNDPEVRQFVDKCLATVSLRLSARELLNDPFLQVDDYEYDLKPVDSGKFDDFGPLFRQPLYDLHRGFSNFSNEYSNGFGYEGDSYIQPADNEACGIELFEHHDDDEPSEHVDISIKGKKKEDGGIFLRLRISDKDGHIRNIYFPFDIELDTAISVATEMVGELDITDQDVTSIADMIDGAIASLVPEWESGPGIIETPPFANQGFCRNCVSNHTSSGSLMEFLSHNQGNLQLPECCKHGCASMHGRFEEITFPSEEYDNHVRENLNISNRSDCLQYQVQWNQHESRELSPVESDQSHSDEQIDKSILAEDQGQNVWENKFPVGATISPRYSSGTHDFSNIRSLYCGLDNHHEKEMRWLKAKYQMELRERKDQQLGLMDNKTSHSGNGGEHITDYAAILSLSLAETLNGGNNGIRLKTVHKSSPNSDTVRNQICEAMESPGGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03935 722 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Trre1g03935 722 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Trre1g03935 722 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03935 722 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03935 722 CDD STKc_WNK 22 281 - -
Trre1g03935 722 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 629 - -
Trre1g03935 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre1g03935 722 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Trre1g03935 722 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 429 IPR024678 GO:0004674|GO:0005524
Trre1g03935 722 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Trre1g03935 722 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03935 722 Gene3D - 372 438 - -
Trre1g03935 722 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03935 Trre-Chr1 43918087 43921213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03935 1 577 MAP Kinase Kinase Kinase AT3G22420 53.698 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre1g03935 Pkinase 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03935 K08867 - gmx:100272198 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03935 1 43918087 43921213 Trre1g03935 1 43918087 43921213 ECH
Trre13g05187 13 57338497 57341524 Trre1g03935 1 43918087 43921213 PCT