LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g03935	ATGAATGGAGTGACACACCTTGAAGAAGGTGACTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAAACAGTATATAAGGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGTTGTATGATTTCTTACAAAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTATTGAAAACATTGAAACACCAAAACATTATGAAATTTTACACCTCTTGGGTTGATACTGCTAATAGGAATATTAACTTTGTAACTGAAATGTTCACTTCTGGTACACTTAGACAGTATAGGCAAAAACACAAGAGAGTTAACATCCGAGCGGTGAAGCATTGGTGCATACAGATCCTGAGAGGACTTCTCTATCTACATAGCCATGACCCGCCAGTGATCCATAGAGATCTCAAATGTGATAACATTTTTGTCAATGGAAATCAAGGAGAAGTCAAAATTGGGGATCTTGGTCTAGCCGCAATTCTTCGGAAATCTCATGCTGCACATTGTGTTGGAACGCCCGAGTTCATGGCACCAGAAGTATACGAAGAGTCGTATAATGAACTAGTCGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGCACGCATCCAGCTCAAATATACAAGAAAGTTATGTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTTAATGATCCGGAAGTGCGGCAATTTGTTGATAAATGCTTGGCCACAGTGTCTCTAAGACTTTCTGCAAGGGAGCTTCTCAATGACCCTTTTCTTCAAGTCGATGATTATGAATATGATTTGAAACCTGTAGACAGTGGAAAATTTGATGACTTTGGTCCCCTCTTCAGGCAGCCACTCTACGATCTTCATCGAGGCTTTAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGTTATGAAGGAGACTCGTATATTCAGCCGGCTGATAATGAAGCCTGTGGAATCGAACTTTTTGAGCACCATGATGATGACGAACCCTCTGAACATGTTGACATAAGTATCAAGGGCAAGAAGAAAGAGGACGGAGGCATATTTTTGAGACTAAGAATTTCTGATAAAGATGGTCACATTCGGAATATTTATTTCCCATTTGACATAGAGCTGGACACAGCCATAAGTGTGGCGACTGAGATGGTTGGAGAACTTGACATTACCGATCAGGATGTTACCAGTATAGCAGATATGATAGATGGGGCAATCGCTTCCTTGGTACCTGAATGGGAATCCGGACCAGGAATCATTGAAACTCCTCCTTTTGCAAATCAAGGTTTCTGCCGCAATTGTGTGTCTAATCACACTTCAAGTGGCTCCCTCATGGAGTTTCTTTCGCATAATCAGGGTAACTTGCAACTTCCCGAATGTTGTAAGCACGGATGTGCTTCAATGCATGGCCGGTTCGAGGAGATTACATTCCCATCAGAGGAGTATGACAATCATGTTAGAGAGAATCTGAACATATCAAACCGATCGGATTGCTTGCAATATCAGGTTCAATGGAATCAGCATGAAAGCCGTGAACTGAGTCCGGTAGAGTCAGATCAAAGTCATTCTGATGAACAAATAGATAAATCAATATTAGCTGAAGATCAAGGACAGAATGTTTGGGAAAATAAATTTCCTGTTGGTGCAACAATTTCCCCGAGATATTCATCAGGAACTCATGATTTCTCCAATATCAGATCGCTATATTGTGGTCTTGACAATCATCATGAGAAAGAAATGAGATGGCTCAAAGCAAAATACCAAATGGAATTACGGGAACGTAAGGATCAACAACTCGGGCTAATGGATAATAAAACTTCTCATAGCGGTAACGGAGGAGAGCACATAACAGATTATGCCGCCATTCTGTCACTTTCATTGGCAGAAACATTAAATGGAGGCAACAATGGGATTCGTTTGAAAACTGTTCATAAAAGCAGCCCCAATTCAGACACCGTAAGGAACCAAATTTGCGAGGCGATGGAATCCCCTGGTGGAGAAGGTATGGTTACTGCGAAGAGTTTTTATACTGGCTCGTTGCTTCCGCACTCTCTGCACAGGACAGTTTCTCTCCCTGTTGATGCTGTTGATATATAA	2169	0.4089	MNGVTHLEEGDSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHQNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCIQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVMSGKKPDALYKVNDPEVRQFVDKCLATVSLRLSARELLNDPFLQVDDYEYDLKPVDSGKFDDFGPLFRQPLYDLHRGFSNFSNEYSNGFGYEGDSYIQPADNEACGIELFEHHDDDEPSEHVDISIKGKKKEDGGIFLRLRISDKDGHIRNIYFPFDIELDTAISVATEMVGELDITDQDVTSIADMIDGAIASLVPEWESGPGIIETPPFANQGFCRNCVSNHTSSGSLMEFLSHNQGNLQLPECCKHGCASMHGRFEEITFPSEEYDNHVRENLNISNRSDCLQYQVQWNQHESRELSPVESDQSHSDEQIDKSILAEDQGQNVWENKFPVGATISPRYSSGTHDFSNIRSLYCGLDNHHEKEMRWLKAKYQMELRERKDQQLGLMDNKTSHSGNGGEHITDYAAILSLSLAETLNGGNNGIRLKTVHKSSPNSDTVRNQICEAMESPGGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI	722

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g03935	722	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
Trre1g03935	722	Gene3D	Transferase(Phosphotransferase) domain 1	107	287	-	-
Trre1g03935	722	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre1g03935	722	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre1g03935	722	CDD	STKc_WNK	22	281	-	-
Trre1g03935	722	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	10	629	-	-
Trre1g03935	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
Trre1g03935	722	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
Trre1g03935	722	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	375	429	IPR024678	GO:0004674\|GO:0005524
Trre1g03935	722	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g03935	Trre-Chr1	43918087	43921213	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g03935	1	577	MAP Kinase Kinase Kinase	AT3G22420	53.698	0.0	610

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Trre1g03935		Pkinase	5.1e-50	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g03935	K08867		-	gmx:100272198	1181.01

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre1g03935	1	43918087	43921213	Trre1g03935	1	43918087	43921213	ECH
	Trre13g05187	13	57338497	57341524	Trre1g03935	1	43918087	43921213	PCT

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