Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03927 ATGTTTGATGGAGTCCCAGACCAATTCCACCAATTCATAACTCCAAGAACATCATCATCATCATCATTACCACTTCATTTACCTTTCCCTCTTTCAACACCAAATAATAACACTTTTCCTACTTTTGATCCTTATAATCAACAATTACCACTACAAGTTCAACCAAATAATCTTTTGCACCCATTACACCATCACAAAGATGATGAACACAAGCCACAAAACAATACTACTACTACTACTACTAATCCTCCTTCAATGAATAACTTCCAAATTGAAAGAGATCAAAGACAAATTCTACCTCAACTCATTGATCCTTGGACTAATGATGAAGTTCTTGCTCTTTTGAAGATCAGATCTAGCATGGAAAATTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGAAGTTGGCAGAAGTTGGATATAAACGTAGTGCAGAAAAATGCAAGGAGAAATTTGAAGAGGAAAGTAGATTCTTCAACAACATTAATAATAATCAAAATCAAAATCAAAATCAGAATAATTTCGGTAAGAATTTCCGGTTTGTTACGGAGCTTGAAGAGCTTTATCAAGGTAGTGGTGAGAATAATAATAATAATAATAATCAAGTTGAGACTCAGAAGCCAAACATCGTACAAGATAAAATGGACCAGAGTGAGGATTCAAGAAACGAAGATGTTTTGGTGACGAAGAAAAGTGAAGATGAGGTGTTTGAGAAAAGTACTACAAATGAAGAGAGGAAGAGGAAGAGAGGTGATAATAGATTTGAAGTGTTTAAAGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAGGAAATGCACAATAAGCTTATTGAAGATATGATTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTAGGAAGAAACAAGAGATGGAGAAGATGAACAAAGAGCTTGAGTTAATGGCACAAGAACAAGCTATTGCTGGTGATAGACAAGCCAATATAATTCAATTCTTGAACAAATTCTCTACTAGTACTAATTCTTCTAGTTCTCTAGCTTTAATTGCAACTTCAATTCAAAGCTTTGGAATTGGAAAAGAAGATAAATCTAAGGTAGCATCTAATTCTTCTACATTGCACTCACAAAACCCTAATCTTGAAAATCATGAAAAAACTCTTCAACCAACACCTGAAAACCCTAGCTCAGGCAATCCTTCTTCGACTACTACTTTGGCGGTTACGCCACACAAGAACAACGCTATTTCTTCTTCTTCGTATAATGTTATATCGAGCGGCGGTGAGAAAGTGGATATAGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAATAACAACAATGAAGAAAAGGAAGGAAACAATATCAACAATAAGGCACCACTTTGGGAAAGAATATCACAAGGGATGTTGGAGTTAGGATACAAAAGAAGTGCAAAAAGATGCAAAGAGAAATGGGAGAATATAAACAAGTACTTTAGAAAAACAAAAGATGCTAATAGGAAAAGGTCACTTGATTCAAGAACATGTCCTTATTTTCATCTATTGAGTAATCTTTATAACCAAGGTAAACTTGTTCTTCAATCTGATCAAAAGCAAGAAAGCAATAATAACATGAATGTGGCAGAAGAAAATATTGTTCAAGAACAAGCTCCACAAGATGAAAAACAAGGTGGTGGTGGTGGTGAGTCTTCTCAAGTGGGACCTGCATATGCTGGTGATTTTACTATGTAA 1746 0.3528 MFDGVPDQFHQFITPRTSSSSSLPLHLPFPLSTPNNNTFPTFDPYNQQLPLQVQPNNLLHPLHHHKDDEHKPQNNTTTTTTNPPSMNNFQIERDQRQILPQLIDPWTNDEVLALLKIRSSMENWFPDFTWEHVSRKLAEVGYKRSAEKCKEKFEEESRFFNNINNNQNQNQNQNNFGKNFRFVTELEELYQGSGENNNNNNNQVETQKPNIVQDKMDQSEDSRNEDVLVTKKSEDEVFEKSTTNEERKRKRGDNRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEARKKQEMEKMNKELELMAQEQAIAGDRQANIIQFLNKFSTSTNSSSSLALIATSIQSFGIGKEDKSKVASNSSTLHSQNPNLENHEKTLQPTPENPSSGNPSSTTTLAVTPHKNNAISSSSYNVISSGGEKVDIGRRWPKDEVLALINLRCNNNNEEKEGNNINNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQKQESNNNMNVAEENIVQEQAPQDEKQGGGGGESSQVGPAYAGDFTM 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03927 581 FunFam Trihelix transcription factor GT-2 106 162 - -
Trre1g03927 581 FunFam Trihelix transcription factor GT-2 435 499 - -
Trre1g03927 581 Pfam Myb/SANT-like DNA-binding domain 104 187 IPR044822 -
Trre1g03927 581 Pfam Myb/SANT-like DNA-binding domain 433 521 IPR044822 -
Trre1g03927 581 Coils Coil 286 321 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 214 250 - -
Trre1g03927 581 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Trre1g03927 581 MobiDBLite consensus disorder prediction 59 88 - -
Trre1g03927 581 Coils Coil 529 549 - -
Trre1g03927 581 PANTHER FI21293P1 64 559 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 74 88 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 192 213 - -
Trre1g03927 581 CDD GT1 433 501 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 192 250 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 366 405 - -
Trre1g03927 581 MobiDBLite consensus disorder prediction 548 581 - -
Trre1g03927 581 ProSiteProfiles Myb-like domain profile. 434 494 IPR001005 -
Trre1g03927 581 Gene3D - 435 499 - -
Trre1g03927 581 Gene3D - 106 161 - -
Trre1g03927 581 SMART sant 431 496 IPR001005 -
Trre1g03927 581 SMART sant 102 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03927 Trre-Chr1 43817835 43820114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03927 1 526 Trihelix Transcription Factor Family AT5G28300 40.970 1.80e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g03927 Myb_DNA-bind_4 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03927 - - tpra:123903108 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03927 1 43817835 43820114 Trre1g03927 1 43817835 43820114 ECH
Trre13g05198 13 57401264 57403146 Trre1g03927 1 43817835 43820114 PCT