Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03920 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTTGTGAGACATAAACATGAGAAGAAAAAATATGTGCTTAAGAAGATTAGACTTGCCCGCCAAACTGAGCGGTCTCGCAGATCTGCACACCAGGAGATGGAGCTTATCTCTAAATTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAACTAACGGTGTTCTGTTTCCTGAAGAGAAACTTTGCAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGATATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCCGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGGCAGGACAAAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGTAAGTCCGTAGTAGCTCCACTACCAACAAAATATTCTAGTTCATTTCGAAGTCTGGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCTGAGCTTCTTGGGCACCCGCATCTTCAATCTTATGTTCTAAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAGTACATTGCCTGTTCATTGGCGAGAGTCAAAATACACAAAGAAAACTAGATTTTTAGTTCCAAAAGATGATACTGTCAGTAGGGATAAGCGCTATTCTTACAGTAATGACCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGGTTGTACATCTGATCATTTGAGTCAAAGGTTAGCAGAATTATGTACAGGAGATATCCGTGACATGAAGTCAGTCCATAAACCTGTTGTTTCCAGAACTTCTAGTATTGGTAAGACTCCAAAGCTCACTTCATCAAAAGTTTCTGCCACCAACAGGAAATCAATGGAACCATCAAAGAATCATAAGGTGCTCCCTGTTTCACATAGTATCACAAAATCTGCTCATACAAATTGCAGAGCATCATTTCCTTTGTCAACAAGGGGCGGTATTCAGCAGCCTCCTTGCAGGCCCAGTGATGGTTTGCTTAGCCAGGTGTCTTCACCAGATATCTCAGTTAACTCTCCCCGTATTGATAGGATAGCTGAATTCCCATTAGCATCATATGAAGATTGTTTGTTCCCTATCAATAAAACGTCAACTGGTGCACAAGGTTCCTTAGGATTACCATCTCGTGACAATTACTCAACTGTGATAGACAAATGCACTATAGAGGTCCGTGATAAAGCCTCTGTTAAGCCTAGTAGTACCGATGATTGGCAGGGAATCAAGCACAGCATGTTAAAGGAAATTCAAGAGGATAAAAGTGGTTCCTCCGATCAAAATGCGACGGCAGGTGCATCAAGCTACACATCTTCAGACTTGCAGCGCCGGCAGTTTGACACTTCATCTTTTCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAGTTTAGTGCAAGATTGCTCCAGCAAGCTAGGTATGATGAACTTGGAGTTTTGTTGAAACCATTTGGTCCGGAAAAAGTTTCGCCAAGAGAAACTGCTATCTGGTTAAGCAAAAGCTTCAAAGGGAACACTAACAACACGGAAGAGTCCCCGTAA 1857 0.4168 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGQKPAFKAFDIQALIIKISKSVVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQSYVLKIHLKLNSPRRSTLPVHWRESKYTKKTRFLVPKDDTVSRDKRYSYSNDRTLNPSVSGADQDSVCSTLEIGCTSDHLSQRLAELCTGDIRDMKSVHKPVVSRTSSIGKTPKLTSSKVSATNRKSMEPSKNHKVLPVSHSITKSAHTNCRASFPLSTRGGIQQPPCRPSDGLLSQVSSPDISVNSPRIDRIAEFPLASYEDCLFPINKTSTGAQGSLGLPSRDNYSTVIDKCTIEVRDKASVKPSSTDDWQGIKHSMLKEIQEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKGNTNNTEESP 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03920 618 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03920 618 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre1g03920 618 SUPERFAMILY Protein kinase-like (PK-like) 1 313 IPR011009 -
Trre1g03920 618 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Trre1g03920 618 MobiDBLite consensus disorder prediction 523 552 - -
Trre1g03920 618 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 568 - -
Trre1g03920 618 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03920 618 FunFam Serine/threonine-protein kinase Nek3 86 330 - -
Trre1g03920 618 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trre1g03920 618 MobiDBLite consensus disorder prediction 528 552 - -
Trre1g03920 618 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Trre1g03920 618 CDD STKc_Nek 3 258 - -
Trre1g03920 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre1g03920 618 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03920 Trre-Chr1 43641483 43646393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03920 10 260 MAP Kinase Kinase Kinase AT1G53570 32.812 9.35e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre1g03920 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03920 K08857 - gmx:100804898 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03920 1 43641483 43646393 Trre1g03920 1 43641483 43646393 ECH