Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03910 ATGGATAGGGTATTCTCAGTGGACGAAATTCCCGACCACTTATGGTCGCCGCAGATTCACGTCTCCGGCGGCGGCGCTGAACAATCCTCCTCCAACATGAGTCGCAGCGCTTCTGAATGGGCTTTTCAACGCTTTCTTCAAGAAGCTGCCACATCTCCCCTTTCTTCCTCTGTTGCTGATGAAAACGTCGTTGACACCACCGCGCCTCTTTCGACGAAGGACGATGCTGCCGTTTTGAACAATGGTCCTCCGCCTCCACATCCTCCTCCGGTGGCCGTTGATTCGGAAGAATATCGTCGAGCTGTGTTGAAGAGTAAGCTGAGTCTTGCGTGTGCTGCAGTTGCCATGACTAGGGGATCTTTGACTAAATCTCAAGATCTAGCCACTTTTTCTGAGCATGGATCACAGTCATCTAATCCTACTCAAGTTGGACCTCAGCCCATTTTTGAAGGATCTGCTCCTCCTGGAAATGATCCACCTATATTACAAGATAAAGATGCCAAAGCACCACCTGCAATCCCTTCCATACCTCCTGTCCAGAAAAAAACTGTTGCTGCAACTAGGCCATCAACTAGTGGATCATCAAGAGAACAGTCAGATGATGACGAAGCTGAGGGAGAGACATATATGAATGACAACACAGACCCTACTGACGTAAAACGAGTAAGGAGGATGCTTTCCAATAGAGAGTCAGCTAGACGCTCAAGACGAAGAAAGCAGGCTCATTTAACTGAGTTGGAAACACAGGTTTCTCAATTAAGAGGCGAAAATTCTACCCTGGTAAAGCGCCTTACGGATGTGAGCCAAAAGTACACTGAATCTGCTGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACGTTGAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACCGGATTGAACCCGATGTTTCATGTGATGCCTGATATATCATCAATGGGCATGCCATCATTTGATGGAAGCCCTTCAGACAATTCAGCTGATGCGGCTGTTCCTGTGCAAGACGATCCAAATCATCACTTCTACCAACCCGCATCTAATAATTCTATGCCGGTTCACGATATGAGAGTCAACAATGGGTTGGGAGACATTTCTACAATTGAAAATGTACAGCAAAATAATGCAGCAGTTGTAGGTGGAAACAAGATTGGTCAAACAGCTCAAACAGCTTCTCCCTTGCACCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGGTGTCGATTCTTGTGGACCATCTTCTAATGGAGAGCAGTAA 1284 0.4673 MDRVFSVDEIPDHLWSPQIHVSGGGAEQSSSNMSRSASEWAFQRFLQEAATSPLSSSVADENVVDTTAPLSTKDDAAVLNNGPPPPHPPPVAVDSEEYRRAVLKSKLSLACAAVAMTRGSLTKSQDLATFSEHGSQSSNPTQVGPQPIFEGSAPPGNDPPILQDKDAKAPPAIPSIPPVQKKTVAATRPSTSGSSREQSDDDEAEGETYMNDNTDPTDVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLVKRLTDVSQKYTESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFHVMPDISSMGMPSFDGSPSDNSADAAVPVQDDPNHHFYQPASNNSMPVHDMRVNNGLGDISTIENVQQNNAAVVGGNKIGQTAQTASPLHRVASLEHLQKRIRGGGVDSCGPSSNGEQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03910 427 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
Trre1g03910 427 Coils Coil 278 298 - -
Trre1g03910 427 CDD bZIP_plant_GBF1 221 271 IPR045314 GO:0003700|GO:0006355
Trre1g03910 427 Coils Coil 229 263 - -
Trre1g03910 427 MobiDBLite consensus disorder prediction 66 93 - -
Trre1g03910 427 FunFam BZIP transcription factor 218 269 - -
Trre1g03910 427 SUPERFAMILY Leucine zipper domain 220 271 IPR046347 GO:0003700|GO:0006355
Trre1g03910 427 MobiDBLite consensus disorder prediction 15 37 - -
Trre1g03910 427 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Trre1g03910 427 MobiDBLite consensus disorder prediction 131 146 - -
Trre1g03910 427 MobiDBLite consensus disorder prediction 131 218 - -
Trre1g03910 427 MobiDBLite consensus disorder prediction 22 37 - -
Trre1g03910 427 Gene3D - 219 276 - -
Trre1g03910 427 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 270 IPR004827 GO:0003700|GO:0006355
Trre1g03910 427 Pfam bZIP transcription factor 219 271 IPR004827 GO:0003700|GO:0006355
Trre1g03910 427 PANTHER BASIC LEUCINE ZIPPER 63 1 419 - -
Trre1g03910 427 Pfam Basic leucine-zipper C terminal 287 414 IPR020983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03910 Trre-Chr1 43310605 43315787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03910 1 309 bZIP Transcription Factor Family AT4G02640 40.181 1.11e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g03910 bZIP_C 5.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03910 K25784 - gmx:100170702 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03910 1 43310605 43315787 Trre1g03910 1 43310605 43315787 ECH
Trre13g05214 13 57505620 57508784 Trre1g03910 1 43310605 43315787 PCT