Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03906 ATGGCGAATAATTGTTCGGAAGGATTAGGTGACGATTTCTTCGAGCAGATCTTAGCAGTGCCTGAAAATGGAGTTGGATATGGAAGAAATATGGATCATGTTGGTGGAGGAGTGTTGCAATTGGGATCAACTACTACTACTACTACTACACCTTCTGGTGGTGGAATAATGCCATTGGGGTTGAATTTGGAACAAACTCATCATGGATTTCTCAGACACCAACAAGATGCAACGCGGTTTGTTGAGAGTAACATTACCAATAACAACAATCATCATCAACATCTTCGTCTTCATGATATCAATAATCATAACAACAATAACACTTCTTCACCTTCTTCTACTCCGGGAATCACTGATAGGGATTCAATGCACATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAGCCTGTACGCCCCATGCTCCCATCTCCACCTCCTCAACCCCAACTCCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCCGCCAAATCCAGCATCTGTTACAGCCATGCCACAAGCCCCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACAGACCCCCACAGCATTGCTGAGAGGTTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGCATCAACAAGACGGACAAAGCAGCAATGCTTGATGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAGCTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACATAGAAGGTGGAGCTAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAGCTTCTACAATCCAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCACTCATAG 1062 0.4576 MANNCSEGLGDDFFEQILAVPENGVGYGRNMDHVGGGVLQLGSTTTTTTTPSGGGIMPLGLNLEQTHHGFLRHQQDATRFVESNITNNNNHHQHLRLHDINNHNNNNTSSPSSTPGITDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQHQQHFQSQPPNPASVTAMPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03906 353 MobiDBLite consensus disorder prediction 139 182 - -
Trre1g03906 353 FunFam Transcription factor bHLH66 193 258 - -
Trre1g03906 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Trre1g03906 353 SMART finulus 202 251 IPR011598 GO:0046983
Trre1g03906 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 330 - -
Trre1g03906 353 MobiDBLite consensus disorder prediction 157 176 - -
Trre1g03906 353 Gene3D - 191 253 IPR036638 GO:0046983
Trre1g03906 353 Pfam Helix-loop-helix DNA-binding domain 201 245 IPR011598 GO:0046983
Trre1g03906 353 MobiDBLite consensus disorder prediction 99 121 - -
Trre1g03906 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Trre1g03906 353 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03906 Trre-Chr1 43287094 43297122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03906 163 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.016 5.82e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g03906 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03906 - - gmx:100781299 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03906 1 43287094 43297122 Trre1g03906 1 43287094 43297122 ECH