Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03901 ATGACCAGCGTAACGGACGCTGATCGAAACAATTACAACATGATAAACTTTGAAGAGACCGAGTTACGACTCGGTCTCCCTGGAGCAGGTGATCATGGCGAGGTACCAGTTAAAAACAGTTGTGGAAAAAGAGGTTTCTCAGAAACCGCTAATATGGATTTGAAGCTTAATCTTTCTTCAACTAATGACTCTGTTTCATCTTCTTCAACTATAGCTGCAAACAAAGGCATAGAGAAAACATCTACTGCTTCTATTGCTACTGCACCTCCTCGCGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTTAGAAAGAACATAGTAAATGTTCAAAAGAGCAACAATGAATTATCATCAGAAGCAGAAAAGAGTACAAGTGGTGGAAATGGAAATGGAGCATTTGTGAAAGTGAGTATGGATGGTGCACCATATCTACGCAAGGTGGACCTTAAGTTGTACAAGAGCTACCAAGAGCTGTCTGATGCGCTGGCTAAAATGTTTAGTTCATTCACAATTGACAATTGTGGGTCCCAAGTTACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTCGTTCAGTCCTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAGGCAATTGGGTTAGCACCAAGGGCAGTTGAAAAGTGCAAGAACAGAAGCTGA 759 0.4163 MTSVTDADRNNYNMINFEETELRLGLPGAGDHGEVPVKNSCGKRGFSETANMDLKLNLSSTNDSVSSSSTIAANKGIEKTSTASIATAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNELSSEAEKSTSGGNGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03901 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 239 IPR003311 GO:0005634|GO:0006355
Trre1g03901 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Trre1g03901 252 Pfam AUX/IAA family 19 243 IPR033389 -
Trre1g03901 252 Gene3D - 129 246 - -
Trre1g03901 252 FunFam Auxin-responsive protein 129 244 - -
Trre1g03901 252 SUPERFAMILY CAD & PB1 domains 125 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03901 Trre-Chr1 43106361 43109658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03901 138 242 B3 DNA Binding Superfamily AT4G23980 33.333 2.92e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre1g03901 AUX_IAA 2.4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03901 K14484 - cave:132171332 337.421