Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03884 ATGGAGCCACTTGAAGTTGATAGTTTGATGGTGTTGGAAAGTTTGTTTACCAATGAAGTTCCTTTATCTGCACTTGTGGAGATTTTCTTGTATGTGAGGTATAGACATGTAACCTTCAAGAACTTACTTCCTGTTGGTGACTATGCTGCACAATCCAAAGCCATCCCAATATATACTGGTTGTACTCTTAGTTTGCTTGGATTGGAAGATATGCTACAACAACTACAAAAGTTGGCACCTAAACCATATCATGTTCACCTTTCGAGCTACTACATGCATGAAGTTATGGGACTAATCAATTTGTGTAAAACTGATGCTGTTATGGATGACAAGTCTCACACTAAGAGCTTTTATGAAGATGTGCTTGTTTATAGGTCCTTCTGTTTTGATCCTGGTGGACATTTGGATATTGTTCTTGAGACCAAGAATAAGCAGATTTTAACCAAGGCCAAGGGTGTGGATGATTTTGTCAAGAAGCATCATATTCAAACTAGTTGTGGTTGTAAACGAGGATTATTCTACACTGCATGTGATATGTATCTTTTGCAGCTTTGCAGTGGAATTGATGAAAGTTCAATTGGAGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAATCCTTTGCGGATGACGCCCTTTTGGTGCCTTCTGGTTTTCGTGTTATTCCTTTGGATCCCGAATCAATTCACATAAACATTGGAGGTTCTCAAATTCGCAGAACTTTATCGTCTTCTTCACCTGTTCAAGCTTCGTTCAACTTCAAGCTTCATTCATCGTCTTCTTCAGGAAAAATGCAGAGAGAAAATTCACTATTCGCTTGGTATGAGTTGTACTCTGAGCTTTTTAGGTCAAGCCACATTATCATGCGGAGGCGGAGAAAGTTGAATGTTGTTCACCATGGTGACCCTTCGCTAGAGAAAGACCAATCAATTGATAGTTCTAATGAAGTAAACAAAGAGGGAAGTCATATTGAGACCCACTGTGAAAAGAAGACTAGAGTGCACCATTGGTGTTCCAAGAAAGGGAAGGAAATAAGTCAAATTAACAAAAGGAATCGCTCAAAATTTGAGGATTTACATTGCATGGGAACCAAGAATCTTCCGAGGCAAATCCATGAGATGACAACAAAGGCCGGTGGAGTGAAACCTTCACGAGCTGAAATTTATATTGATACTCGAACTCGAAATAATGGGAGTATTGTGACTGTAAAAGCAGCTGCCACAATTCTCAAGAGGTACCCGATGTTGCGAATGGTTCTATTGGCATCAATCAACAAACAACAAGTGACACTAATTCATTACACTTTTAAGGTACATTGA 1320 0.3939 MEPLEVDSLMVLESLFTNEVPLSALVEIFLYVRYRHVTFKNLLPVGDYAAQSKAIPIYTGCTLSLLGLEDMLQQLQKLAPKPYHVHLSSYYMHEVMGLINLCKTDAVMDDKSHTKSFYEDVLVYRSFCFDPGGHLDIVLETKNKQILTKAKGVDDFVKKHHIQTSCGCKRGLFYTACDMYLLQLCSGIDESSIGACAQLVFAPIDESFADDALLVPSGFRVIPLDPESIHINIGGSQIRRTLSSSSPVQASFNFKLHSSSSSGKMQRENSLFAWYELYSELFRSSHIIMRRRRKLNVVHHGDPSLEKDQSIDSSNEVNKEGSHIETHCEKKTRVHHWCSKKGKEISQINKRNRSKFEDLHCMGTKNLPRQIHEMTTKAGGVKPSRAEIYIDTRTRNNGSIVTVKAAATILKRYPMLRMVLLASINKQQVTLIHYTFKVH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03884 439 MobiDBLite consensus disorder prediction 301 324 - -
Trre1g03884 439 Pfam Plant transposase (Ptta/En/Spm family) 334 409 IPR004252 -
Trre1g03884 439 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 176 251 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03884 Trre-Chr1 42693245 42710128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03884 176 251 Homeobox Transcription Factor Family AT2G34710 61.842 6.96e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03884 K09338 - mtr:120577481 135.191