Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03866 ATGGCAGCCACCACCACCAAGCCCAAGAAAACCACCACTTCTTCAAAGAAACCTCTCTCTCATCCAACCTATGCAGAGATGATAACTGAAGCAATCGTGAGCCTGAAAGAGAGAACTGGATCAAGCCAATACGCGATAACGAAATTCATTGAAGAGAAACACAAGGAGTTATCTCCAACTTACCGTAAGCTTGTTCTTCTCCATCTCAAAAAATTAGTCGCTTCTGAAAAGCTCGTTAAGGTCAAAAATTCCTTCAAACTCGCTCCGGCTACTAAGACTTCAACTGCTCTGGCTAAACCTAAAGCTGCTCCGGTGAAGGCTAAATCTGCTGCGGCCAAGCCTAAAGCTGTTGCCAAACCAGCCGCTAAGACTGCTTCCAAGCCTAAGGCTAAAACTGCTGTGAAACCTAAGGCTGCGGCGAAGCCAAAAGCTGTTGCGAAGCCAAAAGCTAAGACGGTTAAGGCTACGCCGGTGAAGAAGGCGGTTAAGAAGGTTCCTGCGAAGGGTGTGAAGAAGCCGAAGAGCGTGAAATCTCCAGTGAAGAAAGCTAAGAAGTGA 558 0.4713 MAATTTKPKKTTTSSKKPLSHPTYAEMITEAIVSLKERTGSSQYAITKFIEEKHKELSPTYRKLVLLHLKKLVASEKLVKVKNSFKLAPATKTSTALAKPKAAPVKAKSAAAKPKAVAKPAAKTASKPKAKTAVKPKAAAKPKAVAKPKAKTVKATPVKKAVKKVPAKGVKKPKSVKSPVKKAKK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03866 185 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g03866 185 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g03866 185 MobiDBLite consensus disorder prediction 142 158 - -
Trre1g03866 185 CDD H15 20 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g03866 185 PRINTS Histone H5 signature 159 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g03866 185 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g03866 185 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g03866 185 PRINTS Histone H5 signature 137 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g03866 185 PRINTS Histone H5 signature 107 121 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre1g03866 185 MobiDBLite consensus disorder prediction 102 185 - -
Trre1g03866 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g03866 185 PANTHER HISTONE H1 7 171 - -
Trre1g03866 185 MobiDBLite consensus disorder prediction 164 185 - -
Trre1g03866 185 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g03866 185 Gene3D - 15 100 IPR036388 -
Trre1g03866 185 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre1g03866 185 SUPERFAMILY "Winged helix" DNA-binding domain 17 101 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03866 Trre-Chr1 42168152 42168799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03866 22 126 Single Myb Histone (SMH) Gene Family AT1G72740 32.110 3.25e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03866 K11275 - gmx:100810590 119.398