Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03854 ATGATGATTTCTCATCTCCATCTGCAGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGGTGGCAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAAAATCAATGGAAAGGATGCCGAAATTGAAACCACCCACGGAAAAAAGGTTGTTGCAAAGTTGTCAAAACTATATCCTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTTCTGCAGAACTTAAAAGCTAGATATGAATTGAATAAAATATATACTTATACTGGAAATATTCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCGCCACCTGGAGAATTAAGTCCTCATGTATTTGCAGTAGCTGATGTTGCATACAGAGCAATGGTTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCTTAGGTGGTAGAGCTGTGACTGAAGGAAGAACAGTCGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTCCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTGGGAAATCCTAAATCATTCCACTACCTTAATCAGTCACAATGCTATGAACTTGCTGATGTAAATGATGCTCATGAGTATCTTGCCACCCGCAGAGCTATGGGTATTGTTGGAATTAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGCAATATTGATTTTGCCAAAGGAAAGGAAATTGATTCATCAGTTCCAAAAGACAACAAAGCCAAATTCCACCTGAAAACAGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGAAGCCTTGACCCGGGAAGTGCAACAGTCAGCAGAGATGGACTGGCAAAGACAATTTATTCTCGCCTGTTTGATTGGCTGGTATACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAGAGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGAACTTGTTCAAGATGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACGTTTGCAAACAAGCTTTATCAAACATTTAAGAAAAACAAGCGCTTTATTAAGCCAAAATTGTCTCAAACAGATTTCACCATTGCTCATTATGCTGGGGAGGTTACTTACCAATCTGACCAATTTTTAGACAAAAATAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGACCTTTTTCCACCACTTCCAGAAGACACATCAAAATCTTCCAAATTTTCTTCATTAGGTTCTCGTTTTAAGATACAACTACAGCAACTAATGGAAACATTAAGTTCCACGGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCGAGAATGTCAATATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGTCGCCCTTTCTTTGAATTTGCCAACAGATTTGGTCTCCTTGCCCTAGAGGCCATGGAAGCAAACTGTAATGAAAAGAATGCTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGTTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTGGTAATGCAGCAAAAGTTATACAACGGCGTGTACGAACCCACCAAGCTCGTAAACATTATCTTACATTGCGAAAGAAGACCATATATGCGCAGTCATGGTGGAGAGGAAGACTTGCATTCAAACGATATGTGAAAATAATAAAGGAGGCCTCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTAGTTACTTTGCAAACAGCGTTAAGGGCCATTGCTGCTCGCAAGGACTACAAATTTGAGAAACAGACCAAAGCTTCCGTCATTATTCAGGCTCAGTGGCGGTGCCATAAAGCTGCCTTACATTATAAGAGGCTTAAAAAAGGTTCAATTGTTACACAATGTAGATGGAGGGGGCGTTTAGCTAGGAGGGATCTTAGGAAACTGAAAATGGCTGCAAGAGATACTGGCGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCGGCGTCTCGAACTGGAAAAAGATTTAAGGGCTGCAAGAGATACTGGTGAACTTCAAGAAGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGATCAATCTACAAGAATTCAAAGCGCAGGAGGTAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAAAAAATTTGATGAAACAAATGCTCTGCTCCTCAAGGAGCGAGAGAATGCAATAAAAGCTGCTATTGAAGTAGTATCTCCTATCACTAAAGAAGCGAAGGTTCTTGTTGAAGATAGAGAGAAGATTAAGACACTGAAAATGGAAATTGAGATCCTAAAGACTTCACTCATGTTAGAGAAACAGAAAGCCAAAGACTTTGAAAGAAAATATAATCAAGCTAAAATTTGTAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACAGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAGGCCGGAAGGGAAGATAACTAATTTAGAATCAGAGAATCGGGTTCTACGTCAACAAGCTGCGTCCATGGCACCTAATAAGTTGCCTTCATGA 3315 0.3994 MMISHLHLQGTPVNIIVGSHVWVADPEEAWVDGQVSKINGKDAEIETTHGKKVVAKLSKLYPKDMEALPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRRAMGIVGISQKDQEAIFRVVAAILHIGNIDFAKGKEIDSSVPKDNKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVYKINNSIGQDPNSKSLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQNLFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKKNKRFIKPKLSQTDFTIAHYAGEVTYQSDQFLDKNKDYVVPEHQDLLIASKCPFVSDLFPPLPEDTSKSSKFSSLGSRFKIQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLEAIRISCAGYPTRRPFFEFANRFGLLALEAMEANCNEKNACQKILEKMGLKGYQIGTTKVFLRVGQIAELDARRAQLLGNAAKVIQRRVRTHQARKHYLTLRKKTIYAQSWWRGRLAFKRYVKIIKEASAVKIQKNIRRYEARKAYKELHMSVVTLQTALRAIAARKDYKFEKQTKASVIIQAQWRCHKAALHYKRLKKGSIVTQCRWRGRLARRDLRKLKMAARDTGALQDAKSKLEKQVEELTRRLELEKDLRAARDTGELQEAKSKLEKQVEELTWRLQLEKGLRINLQEFKAQEVAKLQNSLQEMKKKFDETNALLLKERENAIKAAIEVVSPITKEAKVLVEDREKIKTLKMEIEILKTSLMLEKQKAKDFERKYNQAKICSEERGKRLEDTEKKLRQLQESMTRPEGKITNLESENRVLRQQAASMAPNKLPS 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03854 1104 Gene3D - 675 738 - -
Trre1g03854 1104 Pfam Myosin N-terminal SH3-like domain 17 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 Pfam Myosin head (motor domain) 72 728 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 890 IPR027417 -
Trre1g03854 1104 Coils Coil 921 945 - -
Trre1g03854 1104 Gene3D - 260 318 - -
Trre1g03854 1104 Pfam IQ calmodulin-binding motif 840 860 IPR000048 GO:0005515
Trre1g03854 1104 Pfam IQ calmodulin-binding motif 745 763 IPR000048 GO:0005515
Trre1g03854 1104 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Trre1g03854 1104 Pfam IQ calmodulin-binding motif 866 883 IPR000048 GO:0005515
Trre1g03854 1104 FunFam Class V myosin 447 583 - -
Trre1g03854 1104 Coils Coil 1052 1072 - -
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Trre1g03854 1104 MobiDBLite consensus disorder prediction 1067 1104 - -
Trre1g03854 1104 PRINTS Myosin heavy chain signature 100 119 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 PRINTS Myosin heavy chain signature 157 182 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 PRINTS Myosin heavy chain signature 437 465 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 PRINTS Myosin heavy chain signature 490 518 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 PRINTS Myosin heavy chain signature 204 231 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 Gene3D Kinesin motor domain 73 670 IPR036961 -
Trre1g03854 1104 FunFam Myosin heavy chain 260 315 - -
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 862 891 IPR000048 GO:0005515
Trre1g03854 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 793 IPR027417 -
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 814 843 IPR000048 GO:0005515
Trre1g03854 1104 FunFam unconventional myosin-Va 841 889 - -
Trre1g03854 1104 ProSiteProfiles Myosin motor domain profile. 70 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 Coils Coil 957 991 - -
Trre1g03854 1104 MobiDBLite consensus disorder prediction 1074 1104 - -
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 791 820 IPR000048 GO:0005515
Trre1g03854 1104 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 16 65 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 Gene3D - 743 791 - -
Trre1g03854 1104 Gene3D - 841 890 - -
Trre1g03854 1104 Gene3D - 792 840 - -
Trre1g03854 1104 Gene3D Myosin VI head, motor domain, U50 subdomain 320 609 - -
Trre1g03854 1104 Gene3D - 447 631 - -
Trre1g03854 1104 PANTHER MYOSIN 62 1069 - -
Trre1g03854 1104 SMART iq_5 813 835 IPR000048 GO:0005515
Trre1g03854 1104 SMART iq_5 838 860 IPR000048 GO:0005515
Trre1g03854 1104 SMART iq_5 742 764 IPR000048 GO:0005515
Trre1g03854 1104 SMART iq_5 765 787 IPR000048 GO:0005515
Trre1g03854 1104 SMART iq_5 861 883 IPR000048 GO:0005515
Trre1g03854 1104 SMART iq_5 790 812 IPR000048 GO:0005515
Trre1g03854 1104 FunFam Myosin 2 320 434 - -
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 745 770 IPR000048 GO:0005515
Trre1g03854 1104 CDD MYSc_Myo11 84 728 IPR036018 -
Trre1g03854 1104 Coils Coil 892 919 - -
Trre1g03854 1104 SMART MYSc_2a 65 741 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre1g03854 1104 ProSiteProfiles IQ motif profile. 839 866 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03854 Trre-Chr1 41924988 41936349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03854 10 1104 Myosins gene family AT1G54560 74.612 0.0 1708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03854 K10357 - gmx:100816792 1804.65