Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03826 ATGCAAACTCATTTGTTTCTCTTCTTCTATTGTTACATTTGTGTTTCTCTCTTTTTCACTGAGGGAGCTCAAATTACAACATATGATGAATTCTCAACTCTTCTGTTAATCAAATCAAGTCTTGTTGATCCAATGAATCATCTTAAGGATTGGCAGCCACCGAGCAACGCGACGCGGTGGCAAAGTCAGCTCCATTGTAACTGGACTGGAATTGGTTGTAACTCTAAAGGCTTTGTAGAGAGTCTTGAACTCTACAACATGAACTTAAGTGGTATTGTTTCAAACCACATTCAATCCCTTTCAAGTTTGTCTTATTTCAATATAAGTTGTAATAATTTTGCTTCAACACTTCCAAAATCATTTTCAAACCTCACTTCTCTAAAGAGCTTTGATGTGAGTCAAAACTACTTCATTGGCAACTTTCCGACCGGTTTCGGGAGAGTTGCAAGGCTGAGATCAATCAATGCATCAAGCAATGATTTTTCAGGTCTTCTTCCTGAGGATATTGGAAATGCAACATTCCTCGAAAGCCTCGATTTTCGCGGAAACTACTTTGTAAGTCCAATTCCAAAGAGTTTTAAAAATTTGCAAAATCTTAAATTTTTAGGCCTTTCAGGCAATAACTTCACAGGAAAGATTTCAGAATATCTTGGTGAGCTCAGTTCTTTAGAGACATTGATTATGGGATACAATGAGTTTGAAGGTGAGATTCCTGCAGAATTTGGCAACATGACAAATCTTCAATATCTTGATTTAGCAGTAGGAACTCTCAGTGGACAAATTCCAACTGAATTAGGTAAGTTAAAGAAACTAACTACAATTTACTTATACCGAAACAAATTCACCGCAAAAATTCCGCCTCAACTTGGTAACATTATGTCACTAGAATTTCTAGACCTCTCTGACAATCAGCTCACGGGCGAAATACCGGAAGAACTTGCGAAATTGGAAAACCTGCAGCTTTTGAATTTGATGAGCAATAAACTAACAGGTCATGTTCCTGAGAAACTTGGTGAATTGAAAAACTTAAAGGTTCTTGAGTTATGGAAAAATTATTTAGAAGGTTCTTTGCCATTGAACCTTGGAAGAAATTCTCCTTTGCAGTGGTTAGATGTGTCCTCTAACTCATTGTCTGGTGAGATTCCTCCAGGTTTGTGTACAACAGGGAATCTCACTAAACTAATTCTTTTCAACAATTCGTTCTCCGGTCCGATTCCAAGTGGACTTTCAAATTGTTCGTCGTTGGTGCGTGTTCGGATTCAAAACAATCTTATTTCCGGGACTATTCCGGTTGGATTTGGAAATCTTCTAAGCCTTCAACGGCTAGAGTTGGCGAAGAACAACCTCACTGGACAAATTCCTATTGATATTACCTCTTCCACATCACTTTCCTTCATTGATGTATCTTGGAACCACCTTGAGTCATCTTTACCTTCAGAAATTCTTTCTATTCCAACTCTTCAAGCCTTCATTGCCTCTCACAACAGCTTTGGAGGAACTATCCCAAATGAGTTCCAAGGTTGTCCATCTCTCTCTGTGCTTGATCTTTCGAATGCAAATATCTCCGGTTCAATCCCGGAAAGTATAGCTTCTTGTCAAAAATTAGTCAACCTTAACCTTAGAAACAATCATTTGACTGGTGGAATACCAAAATCAATCACAAACATGCCAACCTTATCAGTTCTTGATCTGTCCAACAATTCACTGACCGGTCGGATACCTGAAAACTTCGGAAGCTCCCCGGCTCTCGAAACAATGAACCTGTCCTATAACAAACTGGAAGGTCCAGTACCCTCAAATGGGGTTCTACTGACCATGAATCCTAACGATTTTATCGGAAATGCCGGTCTTTGCGGAGGCATTCTCCCTCCTTGTTCTCAGAGTTTGACCGTGGCAAGACACAAAAGAAGCTCACACATTAGCCACATTATTATTGGTTTTTTTACCGGTATCTTGGTTATTTTATCTCTTGGTGCAGCATATTTTGGAGGCAAATGGTTATACAATAGATGTTATTTGTGTAACAGCTCCATCCATGATTGGTTCAAACATAACAATAAAGATTGGCCTTGGAGGTTAGTAGCATTCCAAAGGATCAGTTTCACAAGTAGTGAGATACTAACTTGCCTAAAGGAATCAAATGTCATAGGCATGGGTGGTGCTGGTATTGTTTACAAAGCTGAAATCCATAAACCTCAGATAACAGTAGCAGTGAAGAAACTATGGAGGTCAAGCACAGACATAGAAAATGGTGGGAATGATGTATTGAGAGAAGTGGAACTTCTAGGAAGATTGAGGCATAGAAATATTGTGAGGCTATTAGGGTATGTTCACAATGAAAGGGATGTGATAATGGTTTACGAGTACATGCCAAATGGAAACCTCGGAACAGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTAGATTGGGTCTCAAGGTATAACATAGCTCTTGGAGTTGCACAAGGGATGAACTACCTACACCATGATTGTCATCCATCAGTTATTCACAGGGATATCAAGTCTAATAACATACTCCTTGACGCGAATTTGGAGGCAAGAATAGCAGATTTCGGGTTGGCACGGATGATGATTCAAAAGAATGAGACTGTTACAATGGTTGCTGGATCTTATGGTTATATTGCACCAGAATATGGATACACTCTGAAGGTTGATGAGAAGATTGACATATACAGTTATGGAGTGGTACTTTTGGAGCTGATAACTGGTAAAATGCCATTAGACCCTACATTTGAAGAAGCCGTAGACATAGTCGAATGGATACAAAAGAAGAGAAACAACAAAACATTGTTAGAAGCACTAGATCCCACAATAGCTGGTCAGTGCAAACATGTTCAAGAGGAAATGCTTCTTGTTCTTCGGATTGCACTACTATGTACGGCGAAGCTTCCCAAGGAAAGACCGTCCATGAGAGACATCATCACAATGCTTGGAGAAGCAAAGCCAAGAAGGAAAAGCATTTGCGGTAATGGTAGACAAGAGAGTAGCATGGAAAAGGGAACAACCTTTACCACATCCCCAGTAGCAAGTCTTTTGTAG 3063 0.3967 MQTHLFLFFYCYICVSLFFTEGAQITTYDEFSTLLLIKSSLVDPMNHLKDWQPPSNATRWQSQLHCNWTGIGCNSKGFVESLELYNMNLSGIVSNHIQSLSSLSYFNISCNNFASTLPKSFSNLTSLKSFDVSQNYFIGNFPTGFGRVARLRSINASSNDFSGLLPEDIGNATFLESLDFRGNYFVSPIPKSFKNLQNLKFLGLSGNNFTGKISEYLGELSSLETLIMGYNEFEGEIPAEFGNMTNLQYLDLAVGTLSGQIPTELGKLKKLTTIYLYRNKFTAKIPPQLGNIMSLEFLDLSDNQLTGEIPEELAKLENLQLLNLMSNKLTGHVPEKLGELKNLKVLELWKNYLEGSLPLNLGRNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGPIPSGLSNCSSLVRVRIQNNLISGTIPVGFGNLLSLQRLELAKNNLTGQIPIDITSSTSLSFIDVSWNHLESSLPSEILSIPTLQAFIASHNSFGGTIPNEFQGCPSLSVLDLSNANISGSIPESIASCQKLVNLNLRNNHLTGGIPKSITNMPTLSVLDLSNNSLTGRIPENFGSSPALETMNLSYNKLEGPVPSNGVLLTMNPNDFIGNAGLCGGILPPCSQSLTVARHKRSSHISHIIIGFFTGILVILSLGAAYFGGKWLYNRCYLCNSSIHDWFKHNNKDWPWRLVAFQRISFTSSEILTCLKESNVIGMGGAGIVYKAEIHKPQITVAVKKLWRSSTDIENGGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGMNYLHHDCHPSVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKMPLDPTFEEAVDIVEWIQKKRNNKTLLEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSICGNGRQESSMEKGTTFTTSPVASLL 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03826 1020 SMART serkin_6 710 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03826 1020 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 291 360 - -
Trre1g03826 1020 Gene3D Phosphorylase Kinase; domain 1 710 793 - -
Trre1g03826 1020 SUPERFAMILY L domain-like 61 355 - -
Trre1g03826 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 367 629 - -
Trre1g03826 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 27 183 - -
Trre1g03826 1020 MobiDBLite consensus disorder prediction 997 1020 - -
Trre1g03826 1020 ProSiteProfiles Protein kinase domain profile. 710 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03826 1020 Gene3D Ribonuclease Inhibitor 29 148 IPR032675 -
Trre1g03826 1020 Gene3D Ribonuclease Inhibitor 149 213 IPR032675 -
Trre1g03826 1020 FunFam MDIS1-interacting receptor like kinase 1 794 1003 - -
Trre1g03826 1020 Pfam Protein kinase domain 712 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03826 1020 SUPERFAMILY Protein kinase-like (PK-like) 703 985 IPR011009 -
Trre1g03826 1020 SUPERFAMILY RNI-like 259 599 - -
Trre1g03826 1020 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Trre1g03826 1020 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Trre1g03826 1020 Gene3D Ribonuclease Inhibitor 363 629 IPR032675 -
Trre1g03826 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 184 284 - -
Trre1g03826 1020 Gene3D Transferase(Phosphotransferase) domain 1 794 1007 - -
Trre1g03826 1020 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 240 986 - -
Trre1g03826 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Trre1g03826 1020 Pfam Leucine Rich repeat 293 309 IPR001611 GO:0005515
Trre1g03826 1020 MobiDBLite consensus disorder prediction 993 1020 - -
Trre1g03826 1020 PRINTS Leucine-rich repeat signature 556 569 - -
Trre1g03826 1020 PRINTS Leucine-rich repeat signature 295 308 - -
Trre1g03826 1020 FunFam MDIS1-interacting receptor like kinase 1 710 793 - -
Trre1g03826 1020 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Trre1g03826 1020 Gene3D Ribonuclease Inhibitor 214 359 IPR032675 -
Trre1g03826 1020 Pfam Leucine rich repeat N-terminal domain 29 74 IPR013210 -
Trre1g03826 1020 SMART LRR_typ_2 316 340 IPR003591 -
Trre1g03826 1020 SMART LRR_typ_2 436 460 IPR003591 -
Trre1g03826 1020 SMART LRR_typ_2 268 292 IPR003591 -
Trre1g03826 1020 SMART LRR_typ_2 196 220 IPR003591 -
Trre1g03826 1020 SMART LRR_typ_2 100 123 IPR003591 -
Trre1g03826 1020 SMART LRR_typ_2 556 580 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03826 Trre-Chr1 37455982 37459139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03826 4 996 Receptor kinase-like Gene Family AT1G08590 62.834 0.0 1260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g03826 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03826 - - gmx:100793873 1649.41