Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03814 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATGTTGAGAGTGCTTCTGGTGGTTCTGTAAATGATGACTCAGATGATGAGGGATCCTTGCCTTCTGAAATTGATGACAAATTGCATCACGAGGAACCTCTAACTGAGGCGGAGATAGAAGACCTTATTTCTGAGCTATTAGAAGTGGAGAGTAAGGCTGCGGAAGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGCAGCAAACGCTACAGGGGAATGATCTGGAAAATGCTGTTGCTGATGAGATGACTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTCCCAAGTCTTTATAAGTTGATCGAAAGAGAAGCTCCAAACCGTTGTTGTACTGAAACATGGAAAAAGCGAAATCATTGGGTTGGGTCTCAGGCAACTACTGAATTTGCTACATCAGTTTCTGATGCTGAGAAATATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGCAAGTTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAAATTTCTCCCGAAACTCTGGTACTGGGAAAAAAAGAAACAGAGGGGGACTGGGATGTGTTCAATAAAATAATTTCTGATGAAAGTGGTATTGACGCCTCATTTGGAAGTAAGACTTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAAGCTGCCTTAATGGGACTCGAATTTCCTGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGACAATTCTACTGATCCATTTGTCGCAGCAGCTGTTGCAAATGAAAGAGAATTGGATCTTTCTGAGGAGCAAAGTAGACATTTTAAAAAGGTCAAAGAAGAGGAAGATGCAATTGTTGATAAGAAGCTTCAAATACGTTTGAAACACAGGAGGCATCGTAAGAAAAGTAAACAGCGAGAAACAATCACACCTATCATGTCAATGGAGAGCCATGTACAGAAGCATTCATCTGTTGATCAATTTAACCCTGATACTAATGAAGGAACTAGAGTTGAAGGGGAAATTGTGTCTAACAATAACGAGGCTGCATGTTTGAATATGGAGGCCGATAAAATTGAAGGTCTAGATGCCAGTTTTCATCTTGACAAGGAAAATTCAATGGGAGATGGTAATTTGTCAGATCCTCCCAAATCTTCATTGGGTGATGTTATTGAACAGAGAGGAACCAAGCGTCCGAATGATGGTGAACTCGATGCTGATAAAAAGAAGGGCCGGAGTGATCTCGTCAACAGCGACAATGATATACCCGTTTCCGATTCTGATAGTAGCGATTCAGATGATTCAGACGATTCAGACGACTCGGATGATTCAGATGTTTCAGAGACACATGTTACAATAAGCACTAAACGAAGGCGCAAAAAGAAGATAAGGAGGATACTTGATGACACAGAATTAGGAGAAGAGACAAAAAAGAAGATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGAGAGTGCAGTTTTCTGCTTCATCATTTGACAATAGCTCGGCTGGCTGTAATGGGAGTTCTTCTGAAGGTGCAAGTGTTGAAATTCTAGGTGATGCGCTGGCAGGTTATATAGTGAATGTTGTGAGAGAGAAAGGTGAAGAAGTGGTTAGAATACCTCCGAGCATTTCAGCAAAGCTGAAGACCCATCAGATTGCTGGTATAAGGTTTATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCTCATACCATGGGTCTTGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCAATGAGAACTGTTGATTTGGGTTTAAAAACCGCACTTATAGTCACGCCTGTCAATGTGCTACATAATTGGCGGACGGAGTTCATCAAATGGGCACCATCAGAATTAAAGCAACTCAAGGTCTATATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAACTGCTCGCAAAATGGAGAGCGAAAGGTGGTGTATTCTTAATTGGCTATGCTGCTTTCCGGAATTTGTCTTTTGGAAAAAATGTGAAAGACCGGGAGACGGCCAAGGAAATTTGCCATGCTTTGCAGGATGGCCCCGACATTCTTGTGTGTGACGAAGCCCATATCATTAAAAATACTAATGCCGAAGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGCGAAGGATTGCGCTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTTCGAGAAGGTTTCCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCAGACTGATGTAAAAATTATGAACCAAAGATCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGATATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTTGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTATAAGAGATTCCTTGACGTGCATGGGTTCACTACTGTCAAGGAAAATCATGAAAAATTAAGAAAGAGGAGTTTTTTTGCTGGATATCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTGTGTAAGACCTGAAGATGCTGTTGAGAATTTCCTTGTAGATGATATCTCAAGTGATGAAAATTCCGATTCTAATGTGCTTGCTGGAGAGAAATTGAAGTATACAAATGATTTGCTGCAAAGGAAGGATGGTAATGGCTTTTTCATAAAGGGCTGGTGGAAAGATATTCTTCATGAAAAAATTTATAAAGAGCTTGATCAAAGTGGGAAAATGGTTTTGCTAATTGATATACTTACCATGAGTTCTGATGTGGGCGACAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTTTATCTCTCAAAGTTACCACGACGTGGCAAACGAGGGAAGCTGTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCACAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTCAAATAAAAGGGTAAAATGCACACTGATTTCGACTAGAGCTGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGTCAGAAAAAGCCTGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACAAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACTATATCTAAAGAAGAAATGTTGCATCTCTTTGAGTTTGGTGATGACGAGAATCCTGAGACTTTGGCTGAGCTAAGTAAATATGATGGGCTTACTTGTGAACAAAATCCTATTTTGGCTGGGGATTCACTGAAACATACAATACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTGATGGAAAGCTTACTAGGAAAACATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCTTGTTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGGAAATCGTTGGAATGGGAAGAAGTTCAGAGAGTACCGATTGGTGAGACTGTGCCTGAACATAAGCCAGAAGAGTCAAAGGCAGAAGAAGCCCAAGAACCAGAAAAATGGACCCTTTCAACTAAGCTGAGAAATCGTTTCACAAAGCGGCAATGCACTAACCTGGCGCACTTGCTGACACTTAGAAGCCAAGGAATAAAATTTGGGCGCAGTACAGTCTGTGGAGAATGTGCCCGGCCGATAAGGTGGGAAGACTTGAAGATTAAATAG 4038 0.4116 MEGKTEDEVVDVESASGGSVNDDSDDEGSLPSEIDDKLHHEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELQQTLQGNDLENAVADEMTTFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIEREAPNRCCTETWKKRNHWVGSQATTEFATSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLVLGKKETEGDWDVFNKIISDESGIDASFGSKTWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDDNSTDPFVAAAVANERELDLSEEQSRHFKKVKEEEDAIVDKKLQIRLKHRRHRKKSKQRETITPIMSMESHVQKHSSVDQFNPDTNEGTRVEGEIVSNNNEAACLNMEADKIEGLDASFHLDKENSMGDGNLSDPPKSSLGDVIEQRGTKRPNDGELDADKKKGRSDLVNSDNDIPVSDSDSSDSDDSDDSDDSDDSDVSETHVTISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDNSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEVVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRTVDLGLKTALIVTPVNVLHNWRTEFIKWAPSELKQLKVYMLEDVSRDRRAQLLAKWRAKGGVFLIGYAAFRNLSFGKNVKDRETAKEICHALQDGPDILVCDEAHIIKNTNAEVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTVKENHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDCVRPEDAVENFLVDDISSDENSDSNVLAGEKLKYTNDLLQRKDGNGFFIKGWWKDILHEKIYKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSKLPRRGKRGKLWKKGKDWYRLDGRTESSQRQKLVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSKYDGLTCEQNPILAGDSLKHTIPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGETVPEHKPEESKAEEAQEPEKWTLSTKLRNRFTKRQCTNLAHLLTLRSQGIKFGRSTVCGECARPIRWEDLKIK 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03814 1345 PANTHER RAD54-LIKE 21 1342 IPR044574 GO:0016887
Trre1g03814 1345 MobiDBLite consensus disorder prediction 424 446 - -
Trre1g03814 1345 Pfam Helicase conserved C-terminal domain 987 1111 IPR001650 -
Trre1g03814 1345 MobiDBLite consensus disorder prediction 398 490 - -
Trre1g03814 1345 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 991 1159 IPR001650 -
Trre1g03814 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 836 IPR027417 -
Trre1g03814 1345 Coils Coil 107 127 - -
Trre1g03814 1345 SMART ultradead3 578 799 IPR014001 -
Trre1g03814 1345 SMART helicmild6 1014 1111 IPR001650 -
Trre1g03814 1345 MobiDBLite consensus disorder prediction 456 474 - -
Trre1g03814 1345 Gene3D - 847 1189 IPR027417 -
Trre1g03814 1345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 787 IPR014001 -
Trre1g03814 1345 MobiDBLite consensus disorder prediction 1 43 - -
Trre1g03814 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1177 IPR027417 -
Trre1g03814 1345 Gene3D - 555 836 IPR038718 -
Trre1g03814 1345 Pfam SNF2-related domain 604 906 IPR000330 GO:0005524|GO:0140658
Trre1g03814 1345 Coils Coil 49 76 - -
Trre1g03814 1345 CDD SF2_C_SNF 979 1122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03814 Trre-Chr1 37153342 37174147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03814 592 1141 RAD5 or RAD16-like Gene Family AT1G02670 25.739 2.58e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g03814 SNF2_N 2.5e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03814 K10779 - egt:105955484 1625.53