Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03808 ATGCCACATCCAAGGGTTATTAAGGCCTTTGATGCTATGGAGGCCTTAGGAATCTCTAAGAAAGAGGTGAAACCAGTGTTGAAAAATTTGTTTAAACTGTATGATAACAAATGGGAGCTTATTGAAGACGACAACTATCGGGCACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGAAGCAAGAAGAACATAAGAGAAAAGCTCCAATAAGTTGTCATGATGGTGAAAGACCAAAACAGAAACGTCACTTGGTAGATACAGACAACCAGATTTCATCAGCTGACAACTCAAGACAAGTGTTATCTGTAGAAGAGGCTGGCATACCTCCAAAGACTTTTAAACAGGAAACTATGATACCATCACAAACTTCCAGGCAAGATAAGAAGTCTGCAACCAGTTCACATGAATTTCAGAGAAGGAGTGACGATGAAAGGACCTTAAGTTTTCACATGACTGCTAGAGATATAAAAAGTTATCCTGGGACATCATCATCTGCAGGGCATCATCATGAAGACCAAATTGATGAACCTACTAATCCTTGTATTCAGAGGAAAATTATGTCAAGTGATCACTATCAGAAGAATCTTATAACATCAGGAACTGAGAAACCTAAGTTTCATCTTGGATCTGTTTCGACAAGTTACAATGGTTCACCTGATGCTTCAAATGGAAATCATTCTATCAAATCCCTCACAGAGGTGTATCAGAATACACACAAGATAGAAGATAGGCCGACATGCAATAATAACACCAGAACTAGTAAGGGTAACATTGATATTGCTTCTTCACCCTTGGGAGAAGTTAAAATTTCTTTAAATTGTGATGCTGCATTCGGACATCCAAATTTCCATATTCCTAATTTGAATGGTGTTATGAAATCTGTGGAGGAAAAATACCTGAGGACTTCCAAGACTGTTGAGCCCCAATTATCGGTGGCGAAGCTATTAGACGATTTATGCAGAAGTTTTTTGAAGATGGGCATGAATTTGAATCGAAAGGGGTCAAAGCAAGCTCTTGCCGAGGATAAAAAGAAATCCTTTCGATATGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGATGAAACCGACAGTGAGGATTTTCCGAAGTTTAATTACATTCCATGTAATTTAATGTATCAAAGTGCTAATGTCAACATTTCACTTGCTCGGATTGCGGATCAAGGTTGCTGTGCTGGTTGTTCAGGCGACTGCCTTTCCTTACCATTTCCTTGTGCATGCTCTCAAGACACTGGTGGGGAGTTTGCTTACTCTTCACAAGGTTTATTGAAAGAAAAGTTTTTAAAAGATTGCATGTCTATGATAATGGATCCTCAAGATCATCATTATGTGTACTGTAATGAATGCCCAATTGAGAGGTCTAAGAATGAAACCAAACCCGAACCGTGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTATAAGCCGTAAATTGCAGGTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCTGGGGAAATTTTAACAAATACAGAATTGTATGAAAGGATTGTACAAAGTACCGGCAATGAAAGGCATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCCATGATGGAAATCTGATAGATATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCTCTCTTTACAAACAAAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATAACCATCCTATTAAAGCATTCAAGTGTTGTTGTGGAAGCGCTTTTTGCCGTGATAAGAAACAAAAAGGAACTAGATTTACAAAGACTAAAAAACTCAAGCATACATATATAGAGTAG 2064 0.3895 MPHPRVIKAFDAMEALGISKKEVKPVLKNLFKLYDNKWELIEDDNYRALIDAYFESKEDKKQEEHKRKAPISCHDGERPKQKRHLVDTDNQISSADNSRQVLSVEEAGIPPKTFKQETMIPSQTSRQDKKSATSSHEFQRRSDDERTLSFHMTARDIKSYPGTSSSAGHHHEDQIDEPTNPCIQRKIMSSDHYQKNLITSGTEKPKFHLGSVSTSYNGSPDASNGNHSIKSLTEVYQNTHKIEDRPTCNNNTRTSKGNIDIASSPLGEVKISLNCDAAFGHPNFHIPNLNGVMKSVEEKYLRTSKTVEPQLSVAKLLDDLCRSFLKMGMNLNRKGSKQALAEDKKKSFRYVDDITKGSENVKISLLDETDSEDFPKFNYIPCNLMYQSANVNISLARIADQGCCAGCSGDCLSLPFPCACSQDTGGEFAYSSQGLLKEKFLKDCMSMIMDPQDHHYVYCNECPIERSKNETKPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISRKLQVFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYERIVQSTGNERHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCHDGNLIDIPVEVETPDRHYYHLALFTNKNVSAYEELTWDYGIDFDDHNHPIKAFKCCCGSAFCRDKKQKGTRFTKTKKLKHTYIE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03808 687 ProSiteProfiles Pre-SET domain profile. 407 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03808 687 MobiDBLite consensus disorder prediction 158 177 - -
Trre1g03808 687 MobiDBLite consensus disorder prediction 58 89 - -
Trre1g03808 687 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 673 - -
Trre1g03808 687 Pfam SET domain 521 643 IPR001214 GO:0005515
Trre1g03808 687 SMART set_7 509 649 IPR001214 GO:0005515
Trre1g03808 687 Pfam Pre-SET motif 354 501 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03808 687 SMART preset_2 351 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03808 687 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 -
Trre1g03808 687 MobiDBLite consensus disorder prediction 130 150 - -
Trre1g03808 687 MobiDBLite consensus disorder prediction 58 150 - -
Trre1g03808 687 SUPERFAMILY SET domain 360 666 IPR046341 -
Trre1g03808 687 ProSiteProfiles SET domain profile. 509 643 IPR001214 GO:0005515
Trre1g03808 687 CDD SET_SETDB-like 375 643 - -
Trre1g03808 687 FunFam SET-domain containing protein lysine methyltransferase family protein 354 668 - -
Trre1g03808 687 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 681 IPR025776 -
Trre1g03808 687 Gene3D - 1 59 IPR043017 -
Trre1g03808 687 Gene3D SET domain 354 668 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03808 Trre-Chr1 37089248 37096431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03808 351 666 Su(var)3-9 homologs AT5G04940 26.488 2.16e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g03808 Pre-SET 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03808 - - gsj:114402909 997.267