Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03807 ATGCCACATCCAAGGGTTATTAAGGCCTTTGATGCTATGGAGGCCTTAGGAATCTCTAAGAAAGAGGTGAAACCAGTGTTGAAAAATTTGTTTAAACTGTATGATAACAAATGGGAGCTTATTGAAGACGACAACTATCGGGCACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGCAAGAAGAACATAAGAGAAAAGCTCCAATAAGTTGTCATGATGGTGAAAGACCAAAACAGAAACGTCACTTGGTAGATACAGACAACCAGATTTCATCAGCTGACAACTCAAGACAAGTGTTATCTGTAGAAGAGGCTGGCATACCTCCAAAGACTTTTAAACAGGAAACTATGATACCATCACAAACTTCCAGGCAAGATAAGAAGTCTGCAACCAGTTCACATGAATTTCAGAGAAGGAGTGACGATGAAAGGACCTTAAGTTTTCACATGACTGCTAGAGATATAAAAAGTTATCCTGGGACATCATCATCTGCAGGGCATCATCATGAAGACCAAATTGATGAACCTACTAATCCTTGTATTCAGAGGAAAATTATGTCAAGTGATCACTATCAGAAGAATCTTATAACATCAGGAACTGAGAAACCTAAGTTTCATCTTGGATCTGTTTCGACAAGTTACAATGGTTCACCTGATGCTTCAAATGGAAATCATTCTATCAAATCCCTCACAGAGGTGTATCAGAATACACACAAGATAGAAGATAGGCCGACATGCAATAATAACACCAGAACTAGTAAGGGTAACATTGATATTGCTTCTTCACCCTTGGGAGAAGTTAAAATTTCTTTAAATTGTGATGCTGCATTCGGACATCCAAATTTCCATATTCCTAATTTGAATGGTGTTATGAAATCTGTGGAGGAAAAATACCTGAGGACTTCCAAGACTGTTGAGCCCCAATTATCGGTGGCGAAGCTATTAGACGATTTATGCAGAAGTTTTTTGAAGATGGGCATGAATTTGAATCGAAAGGGGTCAAAGCAAGCTCTTGCCGAGGATAAAAAGAAATCCTTTCGATATGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGATGAAACCGACAGTGAGGATTTTCCGAAGTTTAATTACATTCCATGTAATTTAATGTATCAAAGTGCTAATGTCAACATTTCACTTGCTCGGATTGCGGATCAAGGTTGCTGTGCTGGTTGTTCAGGCGACTGCCTTTCCTTACCATTTCCTTGTGCATGCTCTCAAGACACTGGTGGGGAGTTTGCTTACTCTTCACAAGGTTTATTGAAAGAAAAGTTTTTAAAAGATTGCATGTCTATGATAATGGATCCTCAAGATCATCATTATGTGTACTGTAATGAATGCCCAATTGAGAGGTCTAAGAATGAAACCAAACCCGAACCGTGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTATAAGCCGTAAATTGCAGGTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCTGGGGAAATTTTAACAAATACAGAATTGTATGAAAGGATTGTACAAAGTACCGGCAATGAAAGGCATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCCATGATGGAAATCTGATAGATATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCTCTCTTTACAAACAAAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATAACCATCCTATTAAAGCATTCAAGTGTTGTTGTGGAAGCGCTTTTTGCCGTGATAAGAAACAAAAAGGAACTAGATTTACAAAGACTAAAAAACTCAAGCATACATATATAGAGTAG 2061 0.3896 MPHPRVIKAFDAMEALGISKKEVKPVLKNLFKLYDNKWELIEDDNYRALIDAYFESKEDKQEEHKRKAPISCHDGERPKQKRHLVDTDNQISSADNSRQVLSVEEAGIPPKTFKQETMIPSQTSRQDKKSATSSHEFQRRSDDERTLSFHMTARDIKSYPGTSSSAGHHHEDQIDEPTNPCIQRKIMSSDHYQKNLITSGTEKPKFHLGSVSTSYNGSPDASNGNHSIKSLTEVYQNTHKIEDRPTCNNNTRTSKGNIDIASSPLGEVKISLNCDAAFGHPNFHIPNLNGVMKSVEEKYLRTSKTVEPQLSVAKLLDDLCRSFLKMGMNLNRKGSKQALAEDKKKSFRYVDDITKGSENVKISLLDETDSEDFPKFNYIPCNLMYQSANVNISLARIADQGCCAGCSGDCLSLPFPCACSQDTGGEFAYSSQGLLKEKFLKDCMSMIMDPQDHHYVYCNECPIERSKNETKPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISRKLQVFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYERIVQSTGNERHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCHDGNLIDIPVEVETPDRHYYHLALFTNKNVSAYEELTWDYGIDFDDHNHPIKAFKCCCGSAFCRDKKQKGTRFTKTKKLKHTYIE 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03807 686 MobiDBLite consensus disorder prediction 57 88 - -
Trre1g03807 686 SMART preset_2 350 492 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03807 686 SUPERFAMILY SET domain 359 665 IPR046341 -
Trre1g03807 686 FunFam SET-domain containing protein lysine methyltransferase family protein 353 667 - -
Trre1g03807 686 Pfam SET domain 520 642 IPR001214 GO:0005515
Trre1g03807 686 Gene3D - 1 59 IPR043017 -
Trre1g03807 686 MobiDBLite consensus disorder prediction 157 176 - -
Trre1g03807 686 Pfam Pre-SET motif 353 500 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03807 686 MobiDBLite consensus disorder prediction 57 149 - -
Trre1g03807 686 Gene3D SET domain 353 667 IPR046341 -
Trre1g03807 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 680 IPR025776 -
Trre1g03807 686 CDD SET_SETDB-like 374 642 - -
Trre1g03807 686 ProSiteProfiles SET domain profile. 508 642 IPR001214 GO:0005515
Trre1g03807 686 ProSiteProfiles Pre-SET domain profile. 406 505 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g03807 686 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 672 - -
Trre1g03807 686 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 -
Trre1g03807 686 SMART set_7 508 648 IPR001214 GO:0005515
Trre1g03807 686 MobiDBLite consensus disorder prediction 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03807 Trre-Chr1 37089248 37096431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03807 350 665 Su(var)3-9 homologs AT5G04940 26.488 2.15e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g03807 Pre-SET 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03807 - - gsj:114402909 1001.5