Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03806 ATGTCTTCATCTTATCCCTCGTCCTCGTTGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCTCTGCTGAACAACTCCCTGATAACGTCCCTTTTGCCTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGAGGTTCTTTCCTGGGGAACAGATCCGTTTGATGATATTCTTCAGTTTCCTGTTGATGTTCCCATCCAGAATGATCATGTGCAATACAGTGGTTCCGACGCCTTGGGTGGAAACACCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGTTGATGAATCTCCTCAGCCAAATTGGAATGAACTTCTCAGTGATAACAATATAGCAGAACAGGATCCACAAATACAACCTTCTCTCTTGATGCAAGGTACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAAGTTAATGATCTTCCAAATTCTTCTGTGTCGACTACATCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAATCTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTAAATCAGCTTGGTGGAAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCGGAACCATCAGAAGGAATTCAAGAGAAGAATTTGACTTCAATCGATGAAATGGCAACTATAGACTTAAAAACACCTAAGGGAATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAGCGTCTACAAATGATGTTTGAGCAACAGATCAAGCCAGATGAACCTTCTGCTCCACTATCAAGCGGAGTGGCACCTCCACCAGTAGAAAATTTAGAGAACAAAAATGAAGGCCATGAAAACCTTGGAACCAATGGTAGCACTCCAAACAAAAAGCCTGAAGAAAGTTCCCAAGATACAAGCAAAAAGCAAAAGGGAGATGATGGTAAAGTTACTGATGAACTTGAGCTGGAAGAAGACCAATTTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGAGTAA 1257 0.4208 MSSSYPSSSLQAASINSNIRSVGHMFSTSAEQLPDNVPFASASEIHSTPFPQESEVLSWGTDPFDDILQFPVDVPIQNDHVQYSGSDALGGNTKTTDFKEWVDQLMSVDESPQPNWNELLSDNNIAEQDPQIQPSLLMQGTQVSLQQHIPSKEVNDLPNSSVSTTSQIQPSLLMQETQVSLQQHIPSKESNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIQEKNLTSIDEMATIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKPDEPSAPLSSGVAPPPVENLENKNEGHENLGTNGSTPNKKPEESSQDTSKKQKGDDGKVTDELELEEDQFVAPPSKRAKTDE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03806 418 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Trre1g03806 418 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Trre1g03806 418 MobiDBLite consensus disorder prediction 176 208 - -
Trre1g03806 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 259 IPR006447 GO:0003677
Trre1g03806 418 MobiDBLite consensus disorder prediction 337 418 - -
Trre1g03806 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 180 385 IPR044848 GO:0003700
Trre1g03806 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Trre1g03806 418 Gene3D - 204 263 - -
Trre1g03806 418 Pfam MYB-CC type transfactor, LHEQLE motif 292 335 IPR025756 -
Trre1g03806 418 Coils Coil 293 313 - -
Trre1g03806 418 MobiDBLite consensus disorder prediction 379 396 - -
Trre1g03806 418 FunFam Myb family transcription factor 204 262 - -
Trre1g03806 418 MobiDBLite consensus disorder prediction 362 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03806 Trre-Chr1 37056449 37059377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03806 17 334 G2-like Transcription Factor Family AT4G28610 45.428 6.95e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g03806 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03806 - - psat:127093006 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03806 1 37056449 37059377 Trre1g03806 1 37056449 37059377 ECH
Trre13g04018 13 48286072 48291172 Trre1g03806 1 37056449 37059377 ECH
Trre13g04018 13 48286072 48291172 Trre1g03806 1 37056449 37059377 PCT
Trre13g05241 13 57696486 57699047 Trre1g03806 1 37056449 37059377 PCT