Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g03806 | ATGTCTTCATCTTATCCCTCGTCCTCGTTGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCTCTGCTGAACAACTCCCTGATAACGTCCCTTTTGCCTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGAGGTTCTTTCCTGGGGAACAGATCCGTTTGATGATATTCTTCAGTTTCCTGTTGATGTTCCCATCCAGAATGATCATGTGCAATACAGTGGTTCCGACGCCTTGGGTGGAAACACCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGTTGATGAATCTCCTCAGCCAAATTGGAATGAACTTCTCAGTGATAACAATATAGCAGAACAGGATCCACAAATACAACCTTCTCTCTTGATGCAAGGTACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAAGTTAATGATCTTCCAAATTCTTCTGTGTCGACTACATCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAATCTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTAAATCAGCTTGGTGGAAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCGGAACCATCAGAAGGAATTCAAGAGAAGAATTTGACTTCAATCGATGAAATGGCAACTATAGACTTAAAAACACCTAAGGGAATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAGCGTCTACAAATGATGTTTGAGCAACAGATCAAGCCAGATGAACCTTCTGCTCCACTATCAAGCGGAGTGGCACCTCCACCAGTAGAAAATTTAGAGAACAAAAATGAAGGCCATGAAAACCTTGGAACCAATGGTAGCACTCCAAACAAAAAGCCTGAAGAAAGTTCCCAAGATACAAGCAAAAAGCAAAAGGGAGATGATGGTAAAGTTACTGATGAACTTGAGCTGGAAGAAGACCAATTTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGAGTAA | 1257 | 0.4208 | MSSSYPSSSLQAASINSNIRSVGHMFSTSAEQLPDNVPFASASEIHSTPFPQESEVLSWGTDPFDDILQFPVDVPIQNDHVQYSGSDALGGNTKTTDFKEWVDQLMSVDESPQPNWNELLSDNNIAEQDPQIQPSLLMQGTQVSLQQHIPSKEVNDLPNSSVSTTSQIQPSLLMQETQVSLQQHIPSKESNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIQEKNLTSIDEMATIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKPDEPSAPLSSGVAPPPVENLENKNEGHENLGTNGSTPNKKPEESSQDTSKKQKGDDGKVTDELELEEDQFVAPPSKRAKTDE | 418 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g03806 | 418 | Pfam | Myb-like DNA-binding domain | 207 | 258 | IPR001005 | - | |
Trre1g03806 | 418 | SUPERFAMILY | Homeodomain-like | 203 | 259 | IPR009057 | - | |
Trre1g03806 | 418 | MobiDBLite | consensus disorder prediction | 176 | 208 | - | - | |
Trre1g03806 | 418 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 205 | 259 | IPR006447 | GO:0003677 | |
Trre1g03806 | 418 | MobiDBLite | consensus disorder prediction | 337 | 418 | - | - | |
Trre1g03806 | 418 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 180 | 385 | IPR044848 | GO:0003700 | |
Trre1g03806 | 418 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 202 | 262 | IPR017930 | - | |
Trre1g03806 | 418 | Gene3D | - | 204 | 263 | - | - | |
Trre1g03806 | 418 | Pfam | MYB-CC type transfactor, LHEQLE motif | 292 | 335 | IPR025756 | - | |
Trre1g03806 | 418 | Coils | Coil | 293 | 313 | - | - | |
Trre1g03806 | 418 | MobiDBLite | consensus disorder prediction | 379 | 396 | - | - | |
Trre1g03806 | 418 | FunFam | Myb family transcription factor | 204 | 262 | - | - | |
Trre1g03806 | 418 | MobiDBLite | consensus disorder prediction | 362 | 378 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g03806 | Trre-Chr1 | 37056449 | 37059377 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g03806 | 17 | 334 | G2-like Transcription Factor Family | AT4G28610 | 45.428 | 6.95e-71 | 227 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Trre1g03806 | Myb_DNA-binding | 1.3e-08 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g03806 | - | - | psat:127093006 | 540.036 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre1g03806 | 1 | 37056449 | 37059377 | Trre1g03806 | 1 | 37056449 | 37059377 | ECH | |
Trre13g04018 | 13 | 48286072 | 48291172 | Trre1g03806 | 1 | 37056449 | 37059377 | ECH | |
Trre13g04018 | 13 | 48286072 | 48291172 | Trre1g03806 | 1 | 37056449 | 37059377 | PCT | |
Trre13g05241 | 13 | 57696486 | 57699047 | Trre1g03806 | 1 | 37056449 | 37059377 | PCT |