Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03799 ATGGAGAACAATGAATGCCAGCCAATTGAGATTGATAGGTGTAAAGAAATTTTTCTTGGTCAAGTTGTGTTTAACAAAGATGAAGCTTATAACTTGTACCAAGAACATGCATTTAAAATGGGTTTTAGTGTAAGAAAGGGGAAAGAGCTATATTATGATGTTGAGAAAAAAAACACACGTAGTAAAGAGTATTATTGCTCCAAACAAGGGTTTAAGAACAATGAATCTCAAGGTGAAGTATCTTATGAAAGGGCAAATTCGAGAACAAATTGCAAGGCTATGGCGAGATTTAATGTGAGCAAGGAAGGGGTATGGAAAGTTTCAAAGTTGGTAATAGATCATAACCATGATCTTGTACCAATTGAACAAAGACATTTATTACGTTCTATGAGAAATATGTCTAATGCCAAAGGAGACTTGATAAAATCTATGGTCAATTCCGGTATACGAGTTACTAATGTTTAG 465 0.3398 MENNECQPIEIDRCKEIFLGQVVFNKDEAYNLYQEHAFKMGFSVRKGKELYYDVEKKNTRSKEYYCSKQGFKNNESQGEVSYERANSRTNCKAMARFNVSKEGVWKVSKLVIDHNHDLVPIEQRHLLRSMRNMSNAKGDLIKSMVNSGIRVTNV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03799 154 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Trre1g03799 154 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03799 Trre-Chr1 37008038 37008502 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g03799 FAR1 2.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03799 - - tpra:123905334 249.595